Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0782 ATGGAGCGGTACGGTCGGACTACAGAGGGCTCACAATCCGATCCGTCTCTGGAATGGACGGCTTCGGTGCCGGAATCAGGTCTCGAGGAGTCCGTTTGGCAGCTGGGATTGGGAGAAGGCGGTGAGTCGTATCCAGAACGTCCCGACGAGGCTGATTGTATTTACTATTTGCGAACAGGATTTTGTGGATATGGCGCTAGATGTCGATTCAACCATCCTCGTGATCGTAGTATGGTTGTGGGAGCTGCAAGAAGGCCAGGGGCAGGCGGAGAGTATCCTGAGCGAATAGACCAGCCCGTATGCCAGTATTATATGAGGACGAGGATGTGTAAATTCGGTGCTTCCTGTAAATATCATCATCCAAGACAAGGTGGAGGTTCTTTGAGCCCGGTTTCTCTGAATTATTATGGATATCCTTTAAGGCCGGGTGAGAGAGAGTGTTCATATTATGTGAAAACTGGTCAGTGCAAATTTGGTGCGACATGTAAATTCCATCATCCACAGCCAGCTGGCATACAATTTCCGGCTCCATCACAAGAAACTCAAGTTCTGCCACCTGTACCTTCACCCTCTGTATACCCTTCTCCTCCTCCTGTGCAGTCTTCTTCTGTTCCTTCACTGCAACAATATGGTGTTGTAGTTGCTAGGCCATCTTTGCTACCTAGTTCATATGTCCATAGTGCATACGGTCCCCTACTTCTTTCCCCTGGCATGTTTCCATATCCTAGCTGGAGTCCTTACCCGGCGCCTATGAGCCCAATTGCCTCTCCTAGTACCCAACCTTCTGTTGGTTCAGTGCCCTTTTATGGGATAACACAACTTTCTCCTTCTGCACCTGCCTATACAGGACCCTATCAGTCTCTGCCTTCTGCTGATCCCTCGAGCAGTAGCCAGAAGGAGCAGTTATTTCCAGAAAGACCGGGACAACCAGAATGTCAGTATTACATGAGAACTGGGGATTGTAAATTTGGATCCTCATGTAGATATCATCATCCCCCAGATTTGGTTGCTCCCATGACCAGTCTTGTCCTTAGTCCCATGGGTCTTCCTCTACGTCCAGGAACCCCACCATGCACTCACTTTACACAACACGGAGTATGCAAGTTTGGTCCGGCATGCAAATACGACCACCCTATGGGAACCCTAAGTTACAGTCCATCTGCCTCGTCCCTTTCTGATATGCCCGTTGCCCCCTACCCTGTTGGATCATCAGTTGCCACTTTAGCTCCATCGTCCTCATCGTCTGATCTGAGATCCGAACTTATCCCGGGACGCACCAATGACTCTAGTTTATCCCGAATGCCTTCATCCATGAGTAAACCTAGTGGATCCGTTGGCTCAACGGTATCACGAAGGGGGCCCATGCAGCCTTCTCAAAGTTCTGGCCCAGGCCTTTCAACTACTAGCAGCATGGAAGCTAGCATTTAA 1428 49.65 MERYGRTTEGSQSDPSLEWTASVPESGLEESVWQLGLGEGGESYPERPDEADCIYYLRTGFCGYGARCRFNHPRDRSMVVGAARRPGAGGEYPERIDQPVCQYYMRTRMCKFGASCKYHHPRQGGGSLSPVSLNYYGYPLRPGERECSYYVKTGQCKFGATCKFHHPQPAGIQFPAPSQETQVLPPVPSPSVYPSPPPVQSSSVPSLQQYGVVVARPSLLPSSYVHSAYGPLLLSPGMFPYPSWSPYPAPMSPIASPSTQPSVGSVPFYGITQLSPSAPAYTGPYQSLPSADPSSSSQKEQLFPERPGQPECQYYMRTGDCKFGSSCRYHHPPDLVAPMTSLVLSPMGLPLRPGTPPCTHFTQHGVCKFGPACKYDHPMGTLSYSPSASSLSDMPVAPYPVGSSVATLAPSSSSSDLRSELIPGRTNDSSLSRMPSSMSKPSGSVGSTVSRRGPMQPSQSSGPGLSTTSSMEASI 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4743249 4748068 + Conep15aG0079700.1 Cone15ag0782 453910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0782 475 Gene3D - 41 123 - -
Cone15ag0782 475 SUPERFAMILY CCCH zinc finger 50 75 IPR036855 GO:0046872(InterPro)
Cone15ag0782 475 SMART c3hfinal6 96 122 IPR000571 GO:0046872(InterPro)
Cone15ag0782 475 SMART c3hfinal6 352 379 IPR000571 GO:0046872(InterPro)
Cone15ag0782 475 SMART c3hfinal6 306 333 IPR000571 GO:0046872(InterPro)
Cone15ag0782 475 SMART c3hfinal6 47 74 IPR000571 GO:0046872(InterPro)
Cone15ag0782 475 SMART c3hfinal6 141 168 IPR000571 GO:0046872(InterPro)
Cone15ag0782 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 168 IPR000571 GO:0046872(InterPro)
Cone15ag0782 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872(InterPro)
Cone15ag0782 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 98 122 IPR000571 GO:0046872(InterPro)
Cone15ag0782 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 307 333 IPR000571 GO:0046872(InterPro)
Cone15ag0782 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 353 379 IPR000571 GO:0046872(InterPro)
Cone15ag0782 475 FunFam CCCH type zinc finger protein 304 389 - -
Cone15ag0782 475 SUPERFAMILY CCCH zinc finger 352 382 IPR036855 GO:0046872(InterPro)
Cone15ag0782 475 Gene3D - 305 390 - -
Cone15ag0782 475 MobiDBLite consensus disorder prediction 181 200 - -
Cone15ag0782 475 ProSiteProfiles Zinc finger C3H1-type profile. 352 380 IPR000571 GO:0046872(InterPro)
Cone15ag0782 475 Gene3D - 124 175 - -
Cone15ag0782 475 ProSiteProfiles Zinc finger C3H1-type profile. 95 123 IPR000571 GO:0046872(InterPro)
Cone15ag0782 475 MobiDBLite consensus disorder prediction 282 303 - -
Cone15ag0782 475 MobiDBLite consensus disorder prediction 282 308 - -
Cone15ag0782 475 ProSiteProfiles Zinc finger C3H1-type profile. 141 169 IPR000571 GO:0046872(InterPro)
Cone15ag0782 475 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872(InterPro)
Cone15ag0782 475 ProSiteProfiles Zinc finger C3H1-type profile. 306 334 IPR000571 GO:0046872(InterPro)
Cone15ag0782 475 SUPERFAMILY CCCH zinc finger 144 169 IPR036855 GO:0046872(InterPro)
Cone15ag0782 475 PANTHER PROTEIN PHOSPHATASE RELATED 41 380 IPR050974 GO:0003729(PANTHER)
Cone15ag0782 475 SUPERFAMILY CCCH zinc finger 310 334 IPR036855 GO:0046872(InterPro)
Cone15ag0782 475 MobiDBLite consensus disorder prediction 1 25 - -
Cone15ag0782 475 MobiDBLite consensus disorder prediction 405 475 - -
Cone15ag0782 475 MobiDBLite consensus disorder prediction 179 200 - -
Cone15ag0782 475 SUPERFAMILY CCCH zinc finger 96 122 IPR036855 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0782 Cone-Chr15:4743249 Cone20ag0922 Cone-Chr20:6637882 1.14E-51 dispersed
Cone11ag0862 Cone-Chr11:7153370 Cone15ag0782 Cone-Chr15:4743249 7.14E-108 wgd
Cone14ag0775 Cone-Chr14:4485559 Cone15ag0782 Cone-Chr15:4743249 1.49E-216 wgd
Cone15ag0782 Cone-Chr15:4743249 Cone18ag0696 Cone-Chr18:3717195 6.40E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44878 PF00789 UBX 7.20E-15 CL0072 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0782 - - - 0.0