Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0801 ATGAGCAGCAGTGATTTGCACTACATCGACAAAGAAAATCAAGTAAGAGGAGAAGAAAATCAAGCAAGTGACAAAGAAAATCAACAAGGGAAGAAAGCCTCTTTAAGAAATAGAAGATTTCAAACTGGCTTCACTCTAAGCCTTGATTTGAGATCAATATACTCTGAGGAGAATAGGAACCACTCTCCAGGAGACGCTGACAGGCCAAGAAGCTCAAAATCTGAAACAGCTTATACCAAGGCTAGCAATGCAGTTTCAGAACATCGTTTGTTCGGTTTCTTGAGAAAAGGACATAATATGCGTTCTCAGGATAAACATACTCCAAAACTCACCAGAAGAGAGAACAAAATTATTAGGACGGAACCTATTAAAGAGGACCACCCGGTCCCGCAACTAACTTCTCCAGTTAAAAATCCATCATTAGATCCTGGATTTTGCTGCTTCAAATCTTCTTGGAGAAATTTCACTCTCTCAGAGCTTGAAGCTGCGACTAACAACTTTGGCCAAGAATATTTGATTGGTGAGGGGGGTTATGCACAAGTGTTCAAGGGGCAATTAGAAGATGGACAACATGTTGCAATTAAGCGACTCGCAGGAGGAAGCCAAGAAGAAATGACCGGTGATTTCTTGTCCGAGCTCGGGATTATGGTCCATGTGGATCATATAAACGTTGCTAAGGTGATTGGGTATGGGGTTGAAGGAGGAATGCACCTTGTTCTTCACTTGTCTCCCCATGGGAGCCTATCATCAATACTTTATGGCTCAAGGGAGAGACTGGATTGGGGTATTAGGTATAAGGTTGCTTTAGGTACTGCTGAGGGCCTTTTGTATCTTCATGAAGGTTGTCAGAGGAGAATAATTCACAGAGATATTAAGGCTTCTAATATATTGCTTTCGGAGGATTTTGATCCTCAGATATCGGATTTTGGGCTTGCAAAGTGGCTTCCAGATCAGTGGACTCACCATGTTGTGTCAAGTATTGAAGGCACATTTGGTTACCTCCCACCAGAGTTCTTTATGCATGGCATAGTAGATGAAAAAACTGATGTCTATGCTTATGGGGTATTGCTGTTAGAACTCATCACAGGTCGGCAAGCTTTGGATAGCTCACAGAAGAGCCTTGTGATGTGGGCAAAACCTCTGCTCTCTAAAGAATGTATTATAGAACTTGTAGATCCATACCTTTTTGATGCCTATGATGTTGGGCAAATGGAACTCATGCTCTCAACTGCTTCAATATGCGTACATCAGTATTCAAATGATCGGCCCACTATGAGTCAGGCTGTCCAGATTCTAAAAGGCGATGAAAACCTGCTCGAGTCTCTTAAAGGCAATGGGGAGAGGTTGGAGCTTGTAGAACAACAAGAGCTTTTGAGTATAGACCTCATTGAGCAAGAACAAGAAGACGACCCTCCTTTGAGTTTGGAACTCATAGACCAACAAGAAGAAGAGCCTTTGAGTTCGGACCTCTTGGAACAACAACAACAAGAGCCTCTGAATTTGGATCCTAAAGAAAACCAAGAACAAGGACAACAACATGACGAAGAACCTTTGAGTTTGGAGTTTGTAGAACATCAACAAGAGCTTCAAATTCCAAGTACAGAAAAAGTGGATTTCTTGTATACTCAAGTTTATAACTTGACCAAGCTTTTGGATGATGTAGATTGA 1668 41.73 MSSSDLHYIDKENQVRGEENQASDKENQQGKKASLRNRRFQTGFTLSLDLRSIYSEENRNHSPGDADRPRSSKSETAYTKASNAVSEHRLFGFLRKGHNMRSQDKHTPKLTRRENKIIRTEPIKEDHPVPQLTSPVKNPSLDPGFCCFKSSWRNFTLSELEAATNNFGQEYLIGEGGYAQVFKGQLEDGQHVAIKRLAGGSQEEMTGDFLSELGIMVHVDHINVAKVIGYGVEGGMHLVLHLSPHGSLSSILYGSRERLDWGIRYKVALGTAEGLLYLHEGCQRRIIHRDIKASNILLSEDFDPQISDFGLAKWLPDQWTHHVVSSIEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWAKPLLSKECIIELVDPYLFDAYDVGQMELMLSTASICVHQYSNDRPTMSQAVQILKGDENLLESLKGNGERLELVEQQELLSIDLIEQEQEDDPPLSLELIDQQEEEPLSSDLLEQQQQEPLNLDPKENQEQGQQHDEEPLSLEFVEHQQELQIPSTEKVDFLYTQVYNLTKLLDDVD 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4913510 4917362 - Conep15aG0081600.1 Cone15ag0801 453929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0801 555 MobiDBLite consensus disorder prediction 1 39 - -
Cone15ag0801 555 MobiDBLite consensus disorder prediction 9 33 - -
Cone15ag0801 555 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 244 445 - -
Cone15ag0801 555 Gene3D Phosphorylase Kinase; domain 1 138 241 - -
Cone15ag0801 555 PANTHER OS08G0249100 PROTEIN 18 448 IPR046958 -
Cone15ag0801 555 MobiDBLite consensus disorder prediction 55 82 - -
Cone15ag0801 555 ProSiteProfiles Protein kinase domain profile. 167 438 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag0801 555 SUPERFAMILY Protein kinase-like (PK-like) 148 432 IPR011009 -
Cone15ag0801 555 MobiDBLite consensus disorder prediction 503 523 - -
Cone15ag0801 555 Gene3D Transferase(Phosphotransferase) domain 1 244 447 - -
Cone15ag0801 555 SMART serkin_6 167 431 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag0801 555 Pfam Protein tyrosine and serine/threonine kinase 172 430 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag0801 555 ProSitePatterns Serine/Threonine protein kinases active-site signature. 286 298 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag0801 555 MobiDBLite consensus disorder prediction 55 74 - -
Cone15ag0801 555 ProSitePatterns Protein kinases ATP-binding region signature. 173 195 IPR017441 GO:0005524(InterPro)
Cone15ag0801 555 Coils Coil 8 28 - -
Cone15ag0801 555 MobiDBLite consensus disorder prediction 507 522 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0801 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0801 Cone-Chr15:4913510 Cone5ag0014 Cone-Chr5:85723 6.12E-112 dispersed
Cone11ag0885 Cone-Chr11:7295858 Cone15ag0801 Cone-Chr15:4913510 1.00E-137 wgd
Cone15ag0801 Cone-Chr15:4913510 Cone18ag0673 Cone-Chr18:3574168 1.49E-144 wgd
Cone15ag0801 Cone-Chr15:4913510 Cone7ag0189 Cone-Chr7:805881 8.93E-158 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g390 . Blo12g00063 . . Bpe04g01182 . Bma04g01062 . Cmo08g01162 . . . . . . . . . . . . . . . Cla06g00524 . . . . . . . Cone15ag0801 Cone7ag0189 . . . Chy11g01451 . . . . . . . . . . . . Cma08g01190 Cma17g00290 Car08g01067 Car17g00266 Cpe12g00242 Cpe17g00108 Bhi12g01765 . . . . . . . . . . . . . Lsi09g01380 . . Cme11g01956
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0054585 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82150 None None None None Cone PK