Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0808 ATGAGCGACTATCGATTTCGCCTCCCGTCCAGCAACTTGGAAGAAAACGTCGAAGAGGAAGATGCAGGGTTGGCTACCCTTGGTGAAAGTTTCGTCAAACTTGAGAGCTTGAGCTTAATTTGGTGCTCCAAAGTTACCAAGGATGGTTTAGTCTCCCTTGCTGAGAAGTGCAGGGCATTGAAATCCTTGGACGTGCAGGGTTGCTTTGCTGGGGACACAGGTGTAGGTGCTGTTGGGCAATTTTGTAAGCAACTTGAAGATCTAAACTTGCACTTTTGTGAAGGTTTGACTGATGTTGGGATGGTTGCATTAGCCCATGGTTGTGGGAAATCATTAAAAACTCTTAGTATTGCAGCTTGTGCAACTATAACTGATGTCTCGCTAGAAGCTATAGGGATGCTCTGCAAATCTCTCGAGACATTGTCATTAAATTCAGAGCTCATAAACAACAAAGGGGTGCTTGCTGTGGCCCAAGGATGCCCTCTTTTGAAAGTTTTGAAGCTGCAATGTATCAATGTTACAGATGAAGCTTTGATTGCTGTAGGCACTTCATGTTTGTCGCTAGAGCTATTGGCTTTGTATAGTATTCAGAAATTCACCGACAAGGGCTTATGTGCTATTGGCATTGGTTGTAAGAAATTAAACAATCTCACTCTAAGCGATTGTTATTTCTTGAGCGACAAGGGTTTGGAAGCAGTTGCAGCTGGTTGTAAAGAACTTATGCAGCTTGAGATTAACGGGTGCCACAATATTGGAAATATGGGATTGGAATCTGTTGGAAAATCTTGCTCGAATCTTGTGGAACTTTCTCTGCTATACTGCCACAGGATTGGTAACATGGGCCTGGTTCAAGTAGGAAAAGGCTGTAAGTTTCTACAATCTCTTGAATTGGTTGATTGCTCAGCTATTGGAGATGAAGCAATCTGCAGTATAGCTAAAGGATGTACAAACCTTAAGAAGCTTTACATCCGACGTTGTCATGAGATAGGGAACAAGGGAATTATAGCTGTTGGTGAGAATTGCACGTCCCTCACTGATCTGAGCCTCAGATATTGTGAGAGGGTTGGAGATGAGGCCCTTATTGCCATTGGAAATAATTGCTCTCTCCATCAATTAAATATCAGTGGCTGCCACCAAATTGGTGATGCTGGAGTGATAGCCATTGCAAGAGGTTGCCCTCAACTCAGTGTCCTTGATGTAAGTGTTCTCAAGAACTTAGGGGATATGGCGATGGCACAAATTGGGGAATGCTGCCCAATGCTCAAGGAGATAGTGCTTTCATATTGCCGTCAGATAACAGACGTGGGTATATACCATCTCGTAAAACATTGCATGAAACTCGAGAACTGCCAAATGATATATTGTCCTAATATTACTCAAGCTGGGGTTGCTTCCGTAGTCTCCAGTTGTGCCAATATAAAGAAGGTACTGGTAGAGAAATGGAAGGTTAGCCAAAGAACCAAAAGAAGGGCAGAATCAGTTATAACTTACCTCTGTATAGACCTCTAA 1509 42.94 MSDYRFRLPSSNLEENVEEEDAGLATLGESFVKLESLSLIWCSKVTKDGLVSLAEKCRALKSLDVQGCFAGDTGVGAVGQFCKQLEDLNLHFCEGLTDVGMVALAHGCGKSLKTLSIAACATITDVSLEAIGMLCKSLETLSLNSELINNKGVLAVAQGCPLLKVLKLQCINVTDEALIAVGTSCLSLELLALYSIQKFTDKGLCAIGIGCKKLNNLTLSDCYFLSDKGLEAVAAGCKELMQLEINGCHNIGNMGLESVGKSCSNLVELSLLYCHRIGNMGLVQVGKGCKFLQSLELVDCSAIGDEAICSIAKGCTNLKKLYIRRCHEIGNKGIIAVGENCTSLTDLSLRYCERVGDEALIAIGNNCSLHQLNISGCHQIGDAGVIAIARGCPQLSVLDVSVLKNLGDMAMAQIGECCPMLKEIVLSYCRQITDVGIYHLVKHCMKLENCQMIYCPNITQAGVASVVSSCANIKKVLVEKWKVSQRTKRRAESVITYLCIDL 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5006981 5011422 - Conep15aG0082300.1 Cone15ag0808 453936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0808 502 SMART LRR_CC_2 367 391 IPR006553 -
Cone15ag0808 502 SMART LRR_CC_2 211 236 IPR006553 -
Cone15ag0808 502 SMART LRR_CC_2 418 443 IPR006553 -
Cone15ag0808 502 SMART LRR_CC_2 160 184 IPR006553 -
Cone15ag0808 502 SMART LRR_CC_2 392 417 IPR006553 -
Cone15ag0808 502 SMART LRR_CC_2 263 288 IPR006553 -
Cone15ag0808 502 SMART LRR_CC_2 109 134 IPR006553 -
Cone15ag0808 502 SMART LRR_CC_2 185 210 IPR006553 -
Cone15ag0808 502 SMART LRR_CC_2 315 340 IPR006553 -
Cone15ag0808 502 SMART LRR_CC_2 31 56 IPR006553 -
Cone15ag0808 502 SMART LRR_CC_2 289 314 IPR006553 -
Cone15ag0808 502 SMART LRR_CC_2 237 262 IPR006553 -
Cone15ag0808 502 SMART LRR_CC_2 341 366 IPR006553 -
Cone15ag0808 502 SMART LRR_CC_2 444 469 IPR006553 -
Cone15ag0808 502 SMART LRR_CC_2 135 159 IPR006553 -
Cone15ag0808 502 SMART LRR_CC_2 57 81 IPR006553 -
Cone15ag0808 502 SMART LRR_CC_2 82 107 IPR006553 -
Cone15ag0808 502 Gene3D Ribonuclease Inhibitor 7 74 IPR032675 -
Cone15ag0808 502 Gene3D Ribonuclease Inhibitor 75 248 IPR032675 -
Cone15ag0808 502 Pfam Leucine Rich repeat 340 363 IPR001611 GO:0005515(InterPro)
Cone15ag0808 502 Pfam Leucine Rich repeat 315 337 IPR001611 GO:0005515(InterPro)
Cone15ag0808 502 Pfam Leucine Rich repeat 418 437 IPR001611 GO:0005515(InterPro)
Cone15ag0808 502 Pfam Leucine Rich repeat 85 105 IPR001611 GO:0005515(InterPro)
Cone15ag0808 502 Pfam Leucine Rich repeat 365 389 IPR001611 GO:0005515(InterPro)
Cone15ag0808 502 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 259 421 IPR050648 GO:0005737(PANTHER)
Cone15ag0808 502 SUPERFAMILY RNI-like 21 255 - -
Cone15ag0808 502 SUPERFAMILY RNI-like 234 482 - -
Cone15ag0808 502 Gene3D Ribonuclease Inhibitor 249 502 IPR032675 -
Cone15ag0808 502 FunFam F-box/LRR-repeat protein 4 155 249 - -
Cone15ag0808 502 FunFam F-box/LRR-repeat protein 4 251 502 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0808 K10268 - - cit:102630803 752.666
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0808 Cone-Chr15:5006981 Cone17ag0861 Cone-Chr17:6829297 2.42E-07 dispersed
Cone15ag0808 Cone-Chr15:5006981 Cone4ag1596 Cone-Chr4:12170005 1.38E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g405 . . Bda03g01248 . . Bpe14g01357 . . Cmo08g01154 Cmo17g00271 . . . . . . . . . . . . . . Cla06g00531 Cam06g0572 Cec06g0570 Cco06g0578 Clacu06g0560 Cmu06g0554 Cre06g1322 . Cone15ag0808 . . . . Chy11g01444 . . . . . . . . . Sed06g0516 . . Cma08g01183 . Car08g01059 Car17g00259 Cpe12g00236 Cpe17g00113 Bhi12g01780 Tan06g2588 Cmetu07g1857 Lac12g2348 . . . . . . . . . . . . . Cme11g01949
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010433 1 1 0 1 1 1 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 2 1 32