Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0813 ATGCCTGACAGAGACTGTGTCTCATATACAACAATGATAATGGGTTTAACTCAAAGTGGCTGTTGGAAGGAAGCAATTAAGGTTTTTAAGGATATGAGGCTTGCGGGTATAGTCCCAAACGAGGTGACCATGGCAACTTTGCTCTCAGCTTGTTCAAATTTCAGTGGGATTTCAAATTGTTTGATGCTTCATGTCTTAGTAGTCAAATTAAAACTCATTGGACATGTTCTTATTTCCACAAATTTGCTGCATATGTACTGTGTTTGTTTAAGAATAGAGGAGGCTGGAACTTTGTTTAGTGAAATGCCTGTGCGGAATATAGTTTCATGGAATGTAATGTTAAATGGGTATGCAAAAGCAGGGCTTGTTGATCAAGCAAGAGGGCTGTTTGATGAAATCCCAGATAAAGATATTATATCATGGGGTACCATGATTGATGGGTATATTCAAGTGCAACAGTTAACTGAAGCTTTGTCCATGTTTCTGAAAATGCTAACTATTGGTATAAGTCCCAATGAAGTTATGATAGTTGATTTGGTTTCGGCTTGTGGAAAATCAATGGCAATTAATGAAGGTCAGCAACTTCATACTATAATCGTAAAACACGCTTTTGACTGTTATGATTTTATACAAGCAACTGTCATTAGCTTTTATGCAGCTTGTGGAAGGATTGATCTTGCCGATTTGCAGTTCCAAGAGAGCATTAAGGACCATATAGCATCTTGGAATGCTATTGTTTCTGGGTTTATAAGAAACAGAATGATTGAGAAGGCCAAACAAACATTCATCGAGATGCCGGTAAGAGATGTGTTTTCATGGAGCACTATGATTTCCGGTTATGCACAGAGTGAGCAGCCTAATATGGCTCTTGAACTCTTCCATGAAATGGTGACTAGTGGGTTCCAACCGAATGAAATCACCATGGTTAGTGTTTTCTCTGCAATTGCTGATTTAGGCACACTGGCAGAAGGAAGATGGGCTCACAAATATATCCATGAGAATTTGATCCCTCTTAATGACAACTTAAGTGCGTCAATCATTGACATGTATGCAAAGTGTGGGAGCATAAACTTGGCCCTAGATGTGTTTTATAAAATCAGGGATAAATCCGCTTCTGTCTCACCTTGGAATGCTATTATATGTGGGTTAGCTATGCACGGACACGTAAATTTATCTCTTGAAATTTTTACTGATTTACAAAATCGTCGAATTAAACTCAATTCGATCACATTCATTGGAGTTCTAAGTGCTTGTTGTCATGCCGGTTTAGTGAGGCCCGGCGAGAGATATTTCAAGAGCATGAGAGATGTATACAGGATAGAACCTAATATCAAGCATTATGGCTGTATGGTTGATCTATTAGGGAGAGCAGGGCGTTTAAAAGAAGCAGAGAACATGATAATAAACATGCCGATGAAACCAGATGTGGTGATATGGGGCACGTTATTGGCGGCTTGTAGAACACATGGGAACATTGAAGTAGGGGAAAGAGCTGCAGAGGCTTTGGCAAGAGTGGGGCCCACTCATGGGGCCAGTAGAGTTTTGCTATCCAATATTTATGCCAATGCAGGGATGTGGGAGGATGCATTTTTGGCAAGGAAGGCAATGCAAAGTCGTAGAATGGAGAGACTGCCGGGATTGAGTGGTGTTGTATGA 1656 40.22 MPDRDCVSYTTMIMGLTQSGCWKEAIKVFKDMRLAGIVPNEVTMATLLSACSNFSGISNCLMLHVLVVKLKLIGHVLISTNLLHMYCVCLRIEEAGTLFSEMPVRNIVSWNVMLNGYAKAGLVDQARGLFDEIPDKDIISWGTMIDGYIQVQQLTEALSMFLKMLTIGISPNEVMIVDLVSACGKSMAINEGQQLHTIIVKHAFDCYDFIQATVISFYAACGRIDLADLQFQESIKDHIASWNAIVSGFIRNRMIEKAKQTFIEMPVRDVFSWSTMISGYAQSEQPNMALELFHEMVTSGFQPNEITMVSVFSAIADLGTLAEGRWAHKYIHENLIPLNDNLSASIIDMYAKCGSINLALDVFYKIRDKSASVSPWNAIICGLAMHGHVNLSLEIFTDLQNRRIKLNSITFIGVLSACCHAGLVRPGERYFKSMRDVYRIEPNIKHYGCMVDLLGRAGRLKEAENMIINMPMKPDVVIWGTLLAACRTHGNIEVGERAAEALARVGPTHGASRVLLSNIYANAGMWEDAFLARKAMQSRRMERLPGLSGVV 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5061480 5063864 - Conep15aG0082800.1 Cone15ag0813 453941

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0813 551 FunFam Pentatricopeptide repeat-containing protein chloroplastic 194 340 - -
Cone15ag0813 551 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 255 548 IPR050421 GO:0005739(PANTHER)|GO:0080156(PANTHER)
Cone15ag0813 551 NCBIfam pentatricopeptide repeat 7 41 IPR002885 -
Cone15ag0813 551 NCBIfam pentatricopeptide repeat 241 268 IPR002885 -
Cone15ag0813 551 NCBIfam pentatricopeptide repeat 108 138 IPR002885 -
Cone15ag0813 551 NCBIfam pentatricopeptide repeat 271 305 IPR002885 -
Cone15ag0813 551 NCBIfam pentatricopeptide repeat 139 173 IPR002885 -
Cone15ag0813 551 FunFam Pentatricopeptide repeat-containing protein At2g03380, mitochondrial 344 551 - -
Cone15ag0813 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 5 39 IPR002885 -
Cone15ag0813 551 Pfam E motif 489 550 IPR046848 -
Cone15ag0813 551 Gene3D Tetratricopeptide repeat domain 71 188 IPR011990 GO:0005515(InterPro)
Cone15ag0813 551 Gene3D Tetratricopeptide repeat domain 1 58 IPR011990 GO:0005515(InterPro)
Cone15ag0813 551 Gene3D Tetratricopeptide repeat domain 189 333 IPR011990 GO:0005515(InterPro)
Cone15ag0813 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Cone15ag0813 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 140 IPR002885 -
Cone15ag0813 551 Gene3D Tetratricopeptide repeat domain 341 543 IPR011990 GO:0005515(InterPro)
Cone15ag0813 551 Pfam PPR repeat 139 169 IPR002885 -
Cone15ag0813 551 Pfam PPR repeat 80 107 IPR002885 -
Cone15ag0813 551 Pfam PPR repeat 447 471 IPR002885 -
Cone15ag0813 551 Pfam PPR repeat 345 369 IPR002885 -
Cone15ag0813 551 Pfam PPR repeat 108 137 IPR002885 -
Cone15ag0813 551 Pfam PPR repeat family 375 420 IPR002885 -
Cone15ag0813 551 Pfam PPR repeat family 5 53 IPR002885 -
Cone15ag0813 551 Pfam PPR repeat family 268 315 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0813 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0813 Cone-Chr15:5061480 Cone19ag0167 Cone-Chr19:956975 2.71E-93 dispersed
Cone16ag0630 Cone-Chr16:7927055 Cone15ag0813 Cone-Chr15:5061480 1.92E-23 dispersed
Cone15ag0813 Cone-Chr15:5061480 Cone5ag0556 Cone-Chr5:2379442 1.17E-95 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g422 . . . . Bpe04g01189 . . . . Cmo17g00263 . . . . . . . . . . . . . . Cla06g00540 . . . . . . . Cone15ag0813 . . . . Chy11g01436 . . . . . . . . . . . . . Cma17g00276 . Car17g00251 Cpe12g00229 . Bhi12g01792 . . . . . . . . . . . . . Lsi09g01362 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012333 1 1 0 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 27