Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0833 ATGAATGCCGGAACGACGACGTTTCAGTCCATACTTGATAAACCCCTAAACCAGCTCACCGAGAATGACATTTCTCAGGTCACACGAGAAGACTGTCGCAAATACCTCAAGGAGAAAGGAATGCGTAGGCCTTCCTGGAACAAATCGCAGGCGATCCAGCAAGTGATTTCTCTCAAAGCTTTGCTCGAACCTTGCGATGATTCCGGCGCCGGTGCTCTCCGGAAGGTGGCTATTTCGCCTCGGGTGAGTTTGAATCAAGGTGATTCAACCAAGGAACCAAGCGACGATGCCCAAGATCCTGCTTCTGTGGATGACTCTGTTACTTGTCGAAAAACGGACCCTCAGAGATCTGTACCTGAGATGAGCGACCCGCCGATTGACCCAGAAAACAATGTCTCAAGTCCCAGAAGTGAAGGTGCACCATTTGAGTCGATTGGGCAAATGACCATTTTCTACTGCGGCAAAGTAAATGTTTACGATGGGGTCGCACCAGAAAAGGCACAAGGGATTATGCATCTTGCGGCTAGCCCGATTCATTTTCCGAACGAGGACTCAGTTGGTGGGACTGGAGCTATTTGGCATTCTCCGTATTATTTGCAAACTGCAAGTGAGAGGGATGGTATTTTTCCTCCTAATGCCAATATGTTCCAGACGATTCAATCAGGGAAGATGGTCGAGTCCCCTCAACAACATCAAGACAAAGGAAATGTGAATCGTGATATTGATGTAGAGGGGCAGGCAAACAGGAAAGTCTCCTTGCAGAGATATCTCGAAAAGAGAAAAGATAGAGGAAGATTAAAGAGCAAGAAAAATCCCGGATTAAATTCTAGCTTGGAGGCGTATTTAAATTATCATGCGAGGACAACACATATCTCAAATGGGAATCCGGGAGAAATAAGAACAATCTCACCTTCACAACCTGGACTACAAGGCTATGTTGGATCAACTGATAATCAGGCAAATATTGCCTATAATCTGCTCAACCTAAACGTAAATGATATTCAAGAATGCTGA 1014 45.56 MNAGTTTFQSILDKPLNQLTENDISQVTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGAGALRKVAISPRVSLNQGDSTKEPSDDAQDPASVDDSVTCRKTDPQRSVPEMSDPPIDPENNVSSPRSEGAPFESIGQMTIFYCGKVNVYDGVAPEKAQGIMHLAASPIHFPNEDSVGGTGAIWHSPYYLQTASERDGIFPPNANMFQTIQSGKMVESPQQHQDKGNVNRDIDVEGQANRKVSLQRYLEKRKDRGRLKSKKNPGLNSSLEAYLNYHARTTHISNGNPGEIRTISPSQPGLQGYVGSTDNQANIAYNLLNLNVNDIQEC 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6085092 6089029 + Conep15aG0084900.1 Cone15ag0833 453961

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0833 337 MobiDBLite consensus disorder prediction 84 140 - -
Cone15ag0833 337 SMART tify_2 141 176 IPR010399 -
Cone15ag0833 337 Pfam tify domain 147 175 IPR010399 -
Cone15ag0833 337 Pfam Jas motif 246 272 IPR018467 -
Cone15ag0833 337 ProSiteProfiles Tify domain profile. 141 176 IPR010399 -
Cone15ag0833 337 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 21 272 IPR040390 GO:0005634(PANTHER)|GO:0009611(PANTHER)|GO:0031347(PANTHER)|GO:2000022(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0833 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0872 Cone-Chr14:5607392 Cone15ag0833 Cone-Chr15:6085092 2.36E-219 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone17ag1184 . 28 247 Tify Gene Family AT1G51600 50.4 6.9e-52 201.8
Cone3ag1079 . 76 250 Tify Gene Family AT1G51600 63.0 1.3e-50 197.6
Cone17ag1183 . 68 245 Tify Gene Family AT1G51600 56.2 1.0e-47 188.0
Cone20ag0548 . 71 248 Tify Gene Family AT1G51600 56.2 1.4e-47 187.6
Cone17ag1184 . 28 247 Tify Gene Family AT1G51600 50.4 6.9e-52 201.8
Cone3ag1079 . 76 250 Tify Gene Family AT1G51600 63.0 1.3e-50 197.6
Cone17ag1183 . 68 245 Tify Gene Family AT1G51600 56.2 1.0e-47 188.0
Cone20ag0548 . 71 248 Tify Gene Family AT1G51600 56.2 1.4e-47 187.6
Cone15ag0833 . 1 181 Tify Gene Family AT4G14713 53.9 7.1e-46 181.4
Cone14ag0872 . 1 190 Tify Gene Family AT4G14713 51.8 2.3e-44 176.4
Cone15ag0833 . 1 287 Tify Gene Family AT4G14720 51.0 1.7e-64 243.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003252 2 5 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44882 PF02470 MlaD 2.20E-14 No_clan Cone TF