Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0870 ATGGCTCCGACTGCACTTGCTTCACGGTTTGAACAATCAGTCACGCCAAACGCTCTCCGGTCTTATCTCGCAGAGTTTATCTCAACGTTCTTATATGTCTTTGCTGCTATCGGATCGACAATGTCGTCTCGGAAGTTGATGCCTGATTCTGGTTCAGACCCAGCAAGTCTGTTAGTGGTTGCTGTGGCCAATGCATTTGCGTTGGCTTCTGCTGTGTACATCTCAGCCAACATCTCGGGCGGGCATGTGAATCCGGCTGTCACTTTCGGAATGGTGGTGGGGGGTCATATAAGTGTCCCCACTGCGCTGTTTTACTGGGCTTCTCAGATGCTCGCCTCTGTTCTTGCCTGCCTTGTCTTAAGCATAACTATTGCTGGACAGCATATCCAGAGCTATGCAATCACAGAGGAAATATCTGGATTTGGAGCATCTATACTGGAAGGCATCCTAACATTTGCTTTGGTTTATACCGTGTGTGTTGCTAGTGACCGTAGACATGGTTCATTCGCTACCACTGGGCCCTTAGCGATTGGGTTGGTTGCCGGAGCCAATATCTTAGCCGCAGGTCCCTTCTCAGGTGGGTCAATGAACCCGGCTTGTGCCTTCGGGTCTGCAATTTTTGCTCGTAGTTTCAAGAACCATGCAGTTTACTGGGTCGGACCGTTGATGGGTGCTGCTGTTGCTGGGCTCTTATATGACAATGTTGTATTTCCCGCAGAGGCTCCAGATTCTGTTAGGAGGACTTCCGATGATATTGGCCTCTAA 765 49.67 MAPTALASRFEQSVTPNALRSYLAEFISTFLYVFAAIGSTMSSRKLMPDSGSDPASLLVVAVANAFALASAVYISANISGGHVNPAVTFGMVVGGHISVPTALFYWASQMLASVLACLVLSITIAGQHIQSYAITEEISGFGASILEGILTFALVYTVCVASDRRHGSFATTGPLAIGLVAGANILAAGPFSGGSMNPACAFGSAIFARSFKNHAVYWVGPLMGAAVAGLLYDNVVFPAEAPDSVRRTSDDIGL 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6663624 6664578 + Conep15aG0088600.1 Cone15ag0870 453998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0870 254 FunFam Probable aquaporin TIP5-1 4 244 - -
Cone15ag0870 254 PANTHER AQUAPORIN-8 10 238 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Cone15ag0870 254 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone15ag0870 254 PRINTS Major intrinsic protein family signature 20 39 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone15ag0870 254 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone15ag0870 254 PRINTS Major intrinsic protein family signature 64 88 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone15ag0870 254 PRINTS Major intrinsic protein family signature 101 120 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone15ag0870 254 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone15ag0870 254 Pfam Major intrinsic protein 15 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone15ag0870 254 SUPERFAMILY Aquaporin-like 13 239 IPR023271 -
Cone15ag0870 254 Gene3D Glycerol uptake facilitator protein. 4 246 IPR023271 -
Cone15ag0870 254 ProSitePatterns MIP family signature. 82 90 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0870 Cone-Chr15:6663624 Cone16ag0705 Cone-Chr16:8283798 5.43E-74 dispersed
Cone15ag0870 Cone-Chr15:6663624 Cone13ag0365 Cone-Chr13:3340961 4.99E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0870 K09873 - mdm:103417848 358.992