Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0918 ATGAGCTTCCAAGATCTTCAAGCTCGTACCTACCACCAAAAACAATCACTTCTCTCCAATGCAAAGCAAGACCCATCTCAAGCTCTTGCTGCTGGAATTTTTCAAATAAACACAGCCGTTTCCTCTTACCATCGCCTCGTTAATACACTTGGCACTGCTAAAGATACGCTTGAACTCCGCGATAGACTAAATAAGACAAGGTTACATATTGCAAAGTTGGTAAAGGATACTTCTGCTAAATTAAAACAAGCTAGTGAAACGGATCTGTACACAGAAGTTAGTGCAACTAAGAAGATTTCAGATGCTAAACTTGCCAAGGATTTCCAGTCTGTTCTTAAAGAATTTCAAAAGGCTCAAAGGCTTGCAGTTGAGAGGGAAACAACATATGCTCCCTTTGTTCCTAAAGAGGTCCTTCCATCTAGTTATTTTGTACAAGAGCTAGAGATAAATTCATCAAAACGTCAAGAACAACAAACTCTTCTCTTTGAATCCAAAAAAGAAGAGGTGATACTCGTGGACAATGAGATTCTATTCAATGAAGCTATTATTGAAGAAAGAGAACAAGGTATCCATGAAATTCAGAACCAAATCAGTGAAGTAAATGAGATTTTTAAAGATCTAGCTGTGTTGGTGCAGGAACAAGGAATTACTATTGATGATATTGGTTCTAACATTGAGGGCTCTCATGCTGCAACAACACAAGCTACGTCCCATCTTATAAAAGCAAAGAAATCCCAAAGATCTGGTTCATCTCTGTCCTGCTTGCTGTTGGTGATATTCGGAATAGTTCTGCTAATCGTGATTATAATCGTAGTGGCTTGA 822 38.44 MSFQDLQARTYHQKQSLLSNAKQDPSQALAAGIFQINTAVSSYHRLVNTLGTAKDTLELRDRLNKTRLHIAKLVKDTSAKLKQASETDLYTEVSATKKISDAKLAKDFQSVLKEFQKAQRLAVERETTYAPFVPKEVLPSSYFVQELEINSSKRQEQQTLLFESKKEEVILVDNEILFNEAIIEEREQGIHEIQNQISEVNEIFKDLAVLVQEQGITIDDIGSNIEGSHAATTQATSHLIKAKKSQRSGSSLSCLLLVIFGIVLLIVIIIVVA 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7248142 7252074 + Conep15aG0093800.1 Cone15ag0918 454046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0918 273 SMART SynN_4 13 127 IPR006011 GO:0016020(InterPro)
Cone15ag0918 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Cone15ag0918 273 Pfam SNARE domain 218 268 IPR000727 -
Cone15ag0918 273 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cone15ag0918 273 PANTHER SYNTAXIN 34 262 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cone15ag0918 273 Gene3D - 178 273 - -
Cone15ag0918 273 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020(InterPro)
Cone15ag0918 273 FunFam Syntaxin-22 like 173 273 - -
Cone15ag0918 273 Gene3D - 12 133 - -
Cone15ag0918 273 SUPERFAMILY t-snare proteins 23 235 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cone15ag0918 273 CDD SNARE_Qa 183 241 - -
Cone15ag0918 273 FunFam Syntaxin-22 like 20 133 - -
Cone15ag0918 273 SMART tSNARE_6 175 242 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0481 Cone-Chr12:3111080 Cone15ag0918 Cone-Chr15:7248142 6.37E-113 dispersed
Cone14ag0931 Cone-Chr14:7523639 Cone15ag0918 Cone-Chr15:7248142 4.12E-73 dispersed
Cone15ag0918 Cone-Chr15:7248142 Cone8ag0484 Cone-Chr8:3325737 5.46E-109 dispersed
Cone14ag0930 Cone-Chr14:7509045 Cone15ag0918 Cone-Chr15:7248142 5.49E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0918 - - - 0.0