Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone15ag0918 | ATGAGCTTCCAAGATCTTCAAGCTCGTACCTACCACCAAAAACAATCACTTCTCTCCAATGCAAAGCAAGACCCATCTCAAGCTCTTGCTGCTGGAATTTTTCAAATAAACACAGCCGTTTCCTCTTACCATCGCCTCGTTAATACACTTGGCACTGCTAAAGATACGCTTGAACTCCGCGATAGACTAAATAAGACAAGGTTACATATTGCAAAGTTGGTAAAGGATACTTCTGCTAAATTAAAACAAGCTAGTGAAACGGATCTGTACACAGAAGTTAGTGCAACTAAGAAGATTTCAGATGCTAAACTTGCCAAGGATTTCCAGTCTGTTCTTAAAGAATTTCAAAAGGCTCAAAGGCTTGCAGTTGAGAGGGAAACAACATATGCTCCCTTTGTTCCTAAAGAGGTCCTTCCATCTAGTTATTTTGTACAAGAGCTAGAGATAAATTCATCAAAACGTCAAGAACAACAAACTCTTCTCTTTGAATCCAAAAAAGAAGAGGTGATACTCGTGGACAATGAGATTCTATTCAATGAAGCTATTATTGAAGAAAGAGAACAAGGTATCCATGAAATTCAGAACCAAATCAGTGAAGTAAATGAGATTTTTAAAGATCTAGCTGTGTTGGTGCAGGAACAAGGAATTACTATTGATGATATTGGTTCTAACATTGAGGGCTCTCATGCTGCAACAACACAAGCTACGTCCCATCTTATAAAAGCAAAGAAATCCCAAAGATCTGGTTCATCTCTGTCCTGCTTGCTGTTGGTGATATTCGGAATAGTTCTGCTAATCGTGATTATAATCGTAGTGGCTTGA | 822 | 38.44 | MSFQDLQARTYHQKQSLLSNAKQDPSQALAAGIFQINTAVSSYHRLVNTLGTAKDTLELRDRLNKTRLHIAKLVKDTSAKLKQASETDLYTEVSATKKISDAKLAKDFQSVLKEFQKAQRLAVERETTYAPFVPKEVLPSSYFVQELEINSSKRQEQQTLLFESKKEEVILVDNEILFNEAIIEEREQGIHEIQNQISEVNEIFKDLAVLVQEQGITIDDIGSNIEGSHAATTQATSHLIKAKKSQRSGSSLSCLLLVIFGIVLLIVIIIVVA | 273 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 7248142 | 7252074 | + | Conep15aG0093800.1 | Cone15ag0918 | 454046 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone15ag0918 | 273 | SMART | SynN_4 | 13 | 127 | IPR006011 | GO:0016020(InterPro) | |
Cone15ag0918 | 273 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 180 | 242 | IPR000727 | - | |
Cone15ag0918 | 273 | Pfam | SNARE domain | 218 | 268 | IPR000727 | - | |
Cone15ag0918 | 273 | ProSitePatterns | Syntaxin / epimorphin family signature. | 186 | 225 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Cone15ag0918 | 273 | PANTHER | SYNTAXIN | 34 | 262 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Cone15ag0918 | 273 | Gene3D | - | 178 | 273 | - | - | |
Cone15ag0918 | 273 | Pfam | Syntaxin-like protein | 30 | 129 | IPR006011 | GO:0016020(InterPro) | |
Cone15ag0918 | 273 | FunFam | Syntaxin-22 like | 173 | 273 | - | - | |
Cone15ag0918 | 273 | Gene3D | - | 12 | 133 | - | - | |
Cone15ag0918 | 273 | SUPERFAMILY | t-snare proteins | 23 | 235 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Cone15ag0918 | 273 | CDD | SNARE_Qa | 183 | 241 | - | - | |
Cone15ag0918 | 273 | FunFam | Syntaxin-22 like | 20 | 133 | - | - | |
Cone15ag0918 | 273 | SMART | tSNARE_6 | 175 | 242 | IPR000727 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag0481 | Cone-Chr12:3111080 | Cone15ag0918 | Cone-Chr15:7248142 | 6.37E-113 | dispersed | |
Cone14ag0931 | Cone-Chr14:7523639 | Cone15ag0918 | Cone-Chr15:7248142 | 4.12E-73 | dispersed | |
Cone15ag0918 | Cone-Chr15:7248142 | Cone8ag0484 | Cone-Chr8:3325737 | 5.46E-109 | dispersed | |
Cone14ag0930 | Cone-Chr14:7509045 | Cone15ag0918 | Cone-Chr15:7248142 | 5.49E-149 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone15ag0918 | - | - | - | 0.0 |