Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone15ag0946 | ATGTGGAAAAACAGTGAGAAAGTGATTATCCCGAGAAACAAACAAAACATAACATTTCAAGGACAAGGCTTCACATCAACGGCAATTGCTTATAATGACACGGCCAATTCATCACATGGCACCTTTTACAGCGGCTCCGTCCAAGTTTTCTCCCCCAACTTCATTGCCAAGAACATAAGCTTCATGAATGTAGCTCCGATTCCGAGTCCTGGAGATGTAGGAGCGCAAGCGGTAGCAATGAGAATAGCAGGAGATCAAGCTGCTTTCTGGGGTTGTGGATTTTTTGGAGCTCAAGACACATTGCATGACGATAAGGGACGCCATTACTTCAAGGAATGCCATATTCAAGGCTCCATTGATTTCATCTTTGGCAATGGAAGATCTTTTTATGAGAACTGCGATTTGGTCTCCATAGCAAACCCGGTAGCCTCAGGATTGAGAGTAATAAACGGAGCCGTTACGGCACATGGAAGAGTTTCAAAGGACGAGAATTCGGGGTTTTCATTCGTAAACTGCAAGGTGGGTGGGAATGGAAGAATATGGCTTGGTCGAGCATGGAGGCCATTTTCTCGTGTAGTCTTTGCTTTCACTTCCATGTCAGATATCATTGCCCCCGAAGGTTGGAACGATTTTAATGATCCTTCAAGAGACCAGACAATCTTCTATGGGGAATATAACTGCACAGGTGTAGGAGCCAATACAACTCAAAGAGCACCTTTTGTTCTTAGACTCAATGACACAGAAGTTGCCCCTTTTCTCAATGTCTCCTTTATAGATGCCGACCAATGGTTGCTATCCTTTGATTAG | 807 | 44.11 | MWKNSEKVIIPRNKQNITFQGQGFTSTAIAYNDTANSSHGTFYSGSVQVFSPNFIAKNISFMNVAPIPSPGDVGAQAVAMRIAGDQAAFWGCGFFGAQDTLHDDKGRHYFKECHIQGSIDFIFGNGRSFYENCDLVSIANPVASGLRVINGAVTAHGRVSKDENSGFSFVNCKVGGNGRIWLGRAWRPFSRVVFAFTSMSDIIAPEGWNDFNDPSRDQTIFYGEYNCTGVGANTTQRAPFVLRLNDTEVAPFLNVSFIDADQWLLSFD | 268 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 7515725 | 7519242 | + | Conep15aG0096600.1 | Cone15ag0946 | 454074 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone15ag0946 | 268 | SUPERFAMILY | Pectin lyase-like | 6 | 264 | IPR011050 | - | |
| Cone15ag0946 | 268 | Gene3D | - | 5 | 267 | IPR012334 | - | |
| Cone15ag0946 | 268 | ProSitePatterns | Pectinesterase signature 2. | 115 | 124 | IPR033131 | - | |
| Cone15ag0946 | 268 | PANTHER | ACYL-COA THIOESTER HYDROLASE YBHC-RELATED | 5 | 264 | - | GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER) | |
| Cone15ag0946 | 268 | Pfam | Pectinesterase | 5 | 260 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone15ag0946 | Cone-Chr15:7515725 | Cone7ag1167 | Cone-Chr7:8690853 | 4.91E-90 | dispersed | |
| Cone15ag0946 | Cone-Chr15:7515725 | Cone13ag1236 | Cone-Chr13:9458454 | 3.22E-116 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone15ag0946 | - | - | - | 0.0 |