Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0957 ATGCAGATGGGAGCTGAGTTTTTCGGCACCTTCATCATGGTGTTTTCAGCAGCAGCAGCACCAATAGTGAACCAAAAGTACAATGGAGCCGAAACTTTAATCGGAAATGCAATGGCAGCAGGGATAGCAGTGATGGCTGTGGTTCTGTCTATTGGCCACATCTCAGGAGCTCACTTAAACCCATCGGTGACCATATCATTTGCAGCTTTGGGACGCTTTCCATTGGCCCAAGTCCCGGCATACATATTAGCCCAAGTTTCTGCATCAATTTGTGCCAGTTTCACGCTGAAGGGCATTTTCCATCCGTTCATGTCGGGTGGTGTAACAGTCCCTTCTGTAAACAATCCTCAAGCTTTTGGACTTGAATTCATCGTTACTTTTATTCTCATGTTTGTCATCACTAGCGTGGCTACTGACACCCGAGCGGTGGGGGAATTGGCTGGTATAGCAATTGGAGGAGTTGTGATACTAGATATTCTTGTGGCAGGGAACACGACTGGTGCCTCGATGAACCCAATACGGACAATTGGCCCGGCCATTGCATCAAGAAATTACAAGGGATTTTGGATATACCTAGTAGCACCAACACTCGGTGCATTAGCTGGTGCAGCAGCCTACACTGTGGTGAAGCTCCATGATAACAGGGAGGAGCAACGAAGGCCTCTACGGAGCTTCCGCCGGAAAGATGACGGTGATAAAGTAATATCATCAGATTCTATTACGGAATTGACCGATAGTTTCTTCTGCTTGCCTGGAGACTGCCAGGCAGTTTGTTCAGAGTTCGAACAAACTAACGTTATTCTCTGTCACAAGGGAACTGTGGCAGTGGCCAATATTCTAAGGAGAAAAGCTCGTGTAGATGATAGTGGAGAGAGGGCAGAAGTCTAA 888 47.18 MQMGAEFFGTFIMVFSAAAAPIVNQKYNGAETLIGNAMAAGIAVMAVVLSIGHISGAHLNPSVTISFAALGRFPLAQVPAYILAQVSASICASFTLKGIFHPFMSGGVTVPSVNNPQAFGLEFIVTFILMFVITSVATDTRAVGELAGIAIGGVVILDILVAGNTTGASMNPIRTIGPAIASRNYKGFWIYLVAPTLGALAGAAAYTVVKLHDNREEQRRPLRSFRRKDDGDKVISSDSITELTDSFFCLPGDCQAVCSEFEQTNVILCHKGTVAVANILRRKARVDDSGERAEV 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7598646 7600058 + Conep15aG0097800.1 Cone15ag0957 454085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0957 295 ProSitePatterns MIP family signature. 58 66 IPR022357 -
Cone15ag0957 295 PRINTS Major intrinsic protein family signature 189 209 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone15ag0957 295 PRINTS Major intrinsic protein family signature 1 15 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone15ag0957 295 PRINTS Major intrinsic protein family signature 152 174 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone15ag0957 295 PRINTS Major intrinsic protein family signature 121 139 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone15ag0957 295 PRINTS Major intrinsic protein family signature 40 64 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone15ag0957 295 PRINTS Major intrinsic protein family signature 77 96 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone15ag0957 295 PANTHER AQUAPORIN NIP2-1 2 214 IPR034294 -
Cone15ag0957 295 Pfam Major intrinsic protein 3 206 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone15ag0957 295 Gene3D Glycerol uptake facilitator protein. 1 221 IPR023271 -
Cone15ag0957 295 SUPERFAMILY Aquaporin-like 3 214 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0957 Cone-Chr15:7598646 Cone8ag0521 Cone-Chr8:3729290 1.61E-100 dispersed
Cone15ag0957 Cone-Chr15:7598646 Cone20ag1150 Cone-Chr20:7806133 2.11E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0957 K09874 - ath:AT4G10380 313.153