Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0987 ATGGATATGGAAGAATCCACTTTTCGAACTATAGATAGTAATACAGATCGAGATCTCGATTTCAGCTTCACTAGCGCCGCCTCAACGGCCACCGACCGGACCTTCGCCTCTTCCTCCCCCCGTAGCAGCTTAGCTCGCAGCAGCTTGACTCTCAGCTTCAACGAATCTCGTCTCTCCTCTATCACCACCACCTCTACTGCCGCATCCGTCACGAGTCTACCGCTGCTCAATATCCGACCTCACCGGAAATCAGAACCGCAATGGTCGGCGATAAAGACTGCCACGAGTCTCTCCTCCGATGGAAAACTCCATCTCCGCCATCTCAAGCTGCTCCACCATTTAGGCACCGGAAACTTAGGGCGAGTCTTCCTCTGTCGCCTTAGAGACAACGATCGCGCGAATTTTGCCCTGAAAGTCGTCGATAAAGACTCGTTGAACAGCAAGAAGCTCTCTCAGGTTCAAATGGAGGCGGAGATCCTCTCCATGCTCGACCATCCTTTCCTCCCCACGCTCTACGCTCGCCTCGAAGTCTCTCACTACACCTGTCTTCTAATCGACTACTGTCCCGGCGGTGATCTTCACTCTCTCCTCCGTAGACAGCCTGGTAACCGGCTATCGGTTCAGGCGGTGAGATTCTTCGCCGGCGAGGTATTAGTCGCGCTCGAGTACCTCCATTCCATCGGCGTAGTCTATCGCGATCTAAAACCAGAAAACGTCCTCTTACGCGAAGACGGCCACGTCATGCTCTCCGATTTCGATTTATGCTTTAAAGCCGATGTGGTCCCCACATTTCAAACCCGGACCCTTAGATCACTGAAAACCCACCAGGGAGTCAGTTGTTTCGGTTCGAACCGGCACGAGCACGAGGAAAGCGTGGTGTCAGAATTCGTTGCGGAGCCGACGACGGCGTTTTCAAAATCGTGCGTTGGGACCCATGAGTATTTGGCGCCAGAATTAGTTTCCGGGTCGGGTCACGGAAACGGTGTTGATTGGTGGGCGTTTGGAGTGTTCGTGTACGAATTGCTGTACGGAACGACGCCGTTCAAGGGTGGGAGTAAGGAGGGAACGCTGAGGAACATAGCGTCGACAAAGGCGGTTAAATTTCCGTTTGGAGAGGGAGAGGAAGAGGTGGGTATGGAAGAAGCTAAGAATTTGATAGATAGGCTGTTAGTGAAGGATCCGAGGAGAAGGATGGGGTGTTCAAATGGGGCCACTGAGGTCAAACGGCATCCGTTCTTCGACGGGATTAAGTGGTCGTTGATTAGAACGTACAGGCCCCCGGAAAATATTAACGGGTTGATGAGGAGGACGAAGGCGCCGATGAAGCACGTGAATCACGTGAGTGGGGTTGTCCCTCTCCCTAAGAGACGGCGGTTGATATGGAACTGGAAGAGGCTGAGTGGTTTGTTCATTAGGAATAAGAAAAATGTTTGTAGTAGTCAATACTATTTGAACCAGAGTAATAGTAATTATTATCATTATGTTAGTAGTAATAATAATGTTAGGCAAAGTAACTAA 1518 50.86 MDMEESTFRTIDSNTDRDLDFSFTSAASTATDRTFASSSPRSSLARSSLTLSFNESRLSSITTTSTAASVTSLPLLNIRPHRKSEPQWSAIKTATSLSSDGKLHLRHLKLLHHLGTGNLGRVFLCRLRDNDRANFALKVVDKDSLNSKKLSQVQMEAEILSMLDHPFLPTLYARLEVSHYTCLLIDYCPGGDLHSLLRRQPGNRLSVQAVRFFAGEVLVALEYLHSIGVVYRDLKPENVLLREDGHVMLSDFDLCFKADVVPTFQTRTLRSLKTHQGVSCFGSNRHEHEESVVSEFVAEPTTAFSKSCVGTHEYLAPELVSGSGHGNGVDWWAFGVFVYELLYGTTPFKGGSKEGTLRNIASTKAVKFPFGEGEEEVGMEEAKNLIDRLLVKDPRRRMGCSNGATEVKRHPFFDGIKWSLIRTYRPPENINGLMRRTKAPMKHVNHVSGVVPLPKRRRLIWNWKRLSGLFIRNKKNVCSSQYYLNQSNSNYYHYVSSNNNVRQSN 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7895874 7897391 - Conep15aG0100800.1 Cone15ag0987 454115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0987 505 FunFam Serine/threonine-protein kinase OXI1 303 431 - -
Cone15ag0987 505 SMART serkin_6 108 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag0987 505 ProSiteProfiles Protein kinase domain profile. 108 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag0987 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag0987 505 SUPERFAMILY Protein kinase-like (PK-like) 85 429 IPR011009 -
Cone15ag0987 505 PANTHER FLIPPASE KINASE 1-RELATED 38 431 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone15ag0987 505 Gene3D Transferase(Phosphotransferase) domain 1 192 426 - -
Cone15ag0987 505 Gene3D Phosphorylase Kinase; domain 1 107 191 - -
Cone15ag0987 505 CDD STKc_phototropin_like 115 428 - -
Cone15ag0987 505 Pfam Protein kinase domain 302 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag0987 505 Pfam Protein kinase domain 110 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag0987 505 FunFam Serine/threonine-protein kinase OXI1 192 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0987 Cone-Chr15:7895874 Cone2ag0261 Cone-Chr2:1333294 2.78E-117 dispersed
Cone14ag0992 Cone-Chr14:8212095 Cone15ag0987 Cone-Chr15:7895874 1.28e-319 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82158 PF13639 zf-RING_2 1.30E-12 CL0229 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0987 - - - 0.0