Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1013 ATGGATTTGCCGGTGAGTAGACTGCCGTTGGGTTCTTCCAATGGAAGGAAAACCCGATTTAAAATAGAAACAAGAAAGCTCTCCTACAAAGTATGTACCGATTATGATTATATGAATTGGGTTTGTACTCATTCAAAGAGGGACCCGAAATTCATCCTGAAAGATGTGAATTGTGAAGCAAATTCGGGAGAGATAACTGCAATTGCCGGTCCAAGTGGGGCCGGAAAAACTACATTGCTTGAGATTATGGGAGGAAAGATTAGTTCACAAATTAACGACATGCTTTCTGGTCAAGTGTTTGTCAATGACCGGCATATGGATCCGAAAAGCTTTCAGAGAATCTCGGGATATGTCACTCAAGACGATGCGCTTTACCCGTTACTTACGGTCGAAGAAACTCTCACTTATAGTGCCTTGCTACGGTTTAATAATTCTAATGGACACAAAGTGGTGACTTGCAGAGTAAGGGAGCTAATGAAAGAGCTTGCATTAGAACATATTGCATCTTCAAGAATCGGTGGGCCTGGATCGAATAGTCGAGGAATTTCGGGAGGTGAAAGGAGAAGGGTTTCGATCGGAGTTGAATTAGTCCACAATCCGGATGTGATTTTGATCGATGAACCAACTTCAGGATTGGATTCAACCTCGGCTCTTCATTTAATCCGAGTTCTTAAAAAAATGATCTTAACTGATCAAGGTAAGACTATTCTCTTAACCATCCATCAACCTGGTTTTCGAATTCTCGAGCTATTTGATCGATTCATTCTTCTCTCTAATGGATTTGTTATGCATAATGGGTCGTTAAATCTTCTAGAAGAAAGGCTTAAACTTTCTGGTCATCAAATTCCACACCATGTCAATGTACTTGAATTCTCCATTGATGTTGTTGAAAGTATGGCCGTCATGTATTCTTCGGAAAGTTTCAATAACTTACATTTTCTCAAAGACCACAGCCCTGAAAATTGTATGGAAGAGAAGAAGCCTTTTGTCTACTCGAATACTTGGTTCAAAGAGGTAATCATACTAGGAGAAAGATTTCGTAGAAACATATTTAGAACAAAACAACTCTTTGTGGCCAGAGTAGTTCAAGCCTTGGTAGCCGGATTGATACTAGGATCCATATTCTTAGACGTCGGAAATGAAAACCGGCATGTTTCTTTACAAACCCACCTCGGTTTTTTCGCGTTTAGTCTAACATTCTTGTTATCCTCAACCACAGAAGGCTTACCAATCTTCTTAGAAGAGAGAAGGATTCTAATGAGAGAGACATCAAGAGGAGCTTATAGAGTTTCTTCCTATGTTTTGGCCAATACCCTAATCTTCATTCCTTTCCTTCTGATGGTCAGCCTCCTATTTGCAACTCCTGTTTATTGGTTAGTGGGCTTAAAGAGAGACATTTTAGGATTCTCTTACTTCACCTTAGTGGTTTGGATGGTGGTTTTGATGTCTAATTCATTTGTGGCTTGTTTTAGTGCACTTGTGCCAAATTTCATCATGGGAACCTCAGTGATTTCAGGGCTAATGGGGTCATTTTTCCTTTTTTCTGGGTATTTTATACCTAAGAAAAGCATACCAAATTACTGGGTTTTCATGCATTATTTGAGCCTTTTCAAGTACCCATTTGAGTGCTTTATGATAAATGAATATGGAGGAGAAGAGAAAGGGAAGGGAAGATGCATAGATTTCAATGGAGGAGAAGGAGGATATTGTAGGGTTTTTGAAGGTGATTTCTTGAGACAACAAGGTCTAAAAGAGTCACAGAAATGGAGTAATTTGGCTGTGATGTTGGGTTTTATTGTTGGGTATAGAGTTGTTTCTTTTCTTATTTTGTGGTACAGATGTTGTAGAACAAGAAACTAG 1860 39.19 MDLPVSRLPLGSSNGRKTRFKIETRKLSYKVCTDYDYMNWVCTHSKRDPKFILKDVNCEANSGEITAIAGPSGAGKTTLLEIMGGKISSQINDMLSGQVFVNDRHMDPKSFQRISGYVTQDDALYPLLTVEETLTYSALLRFNNSNGHKVVTCRVRELMKELALEHIASSRIGGPGSNSRGISGGERRRVSIGVELVHNPDVILIDEPTSGLDSTSALHLIRVLKKMILTDQGKTILLTIHQPGFRILELFDRFILLSNGFVMHNGSLNLLEERLKLSGHQIPHHVNVLEFSIDVVESMAVMYSSESFNNLHFLKDHSPENCMEEKKPFVYSNTWFKEVIILGERFRRNIFRTKQLFVARVVQALVAGLILGSIFLDVGNENRHVSLQTHLGFFAFSLTFLLSSTTEGLPIFLEERRILMRETSRGAYRVSSYVLANTLIFIPFLLMVSLLFATPVYWLVGLKRDILGFSYFTLVVWMVVLMSNSFVACFSALVPNFIMGTSVISGLMGSFFLFSGYFIPKKSIPNYWVFMHYLSLFKYPFECFMINEYGGEEKGKGRCIDFNGGEGGYCRVFEGDFLRQQGLKESQKWSNLAVMLGFIVGYRVVSFLILWYRCCRTRN 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8457533 8459392 - Conep15aG0103400.1 Cone15ag1013 454141

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1013 619 ProSitePatterns ABC transporters family signature. 182 196 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone15ag1013 619 FunFam ATP-binding cassette transporter 42 277 - -
Cone15ag1013 619 Pfam ABC-2 type transporter 339 549 IPR013525 GO:0016020(InterPro)|GO:0140359(InterPro)
Cone15ag1013 619 SMART AAA_5 62 261 IPR003593 GO:0016887(InterPro)
Cone15ag1013 619 Gene3D - 30 287 IPR027417 -
Cone15ag1013 619 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 22 284 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone15ag1013 619 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 21 607 IPR050352 GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Cone15ag1013 619 Pfam ABC-2 type transporter 241 308 IPR043926 GO:0140359(InterPro)
Cone15ag1013 619 Pfam ABC transporter 53 210 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone15ag1013 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 275 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1013 K05681 - - csv:101213419 820.076
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1374 Cone-Chr10:10701998 Cone15ag1013 Cone-Chr15:8457533 4.30E-236 dispersed
Cone12ag0017 Cone-Chr12:154813 Cone15ag1013 Cone-Chr15:8457533 2.22E-173 dispersed
Cone15ag1013 Cone-Chr15:8457533 Cone3ag1445 Cone-Chr3:33158421 2.43E-240 dispersed
Cone14ag1028 Cone-Chr14:8693077 Cone15ag1013 Cone-Chr15:8457533 0 wgd
Cone15ag1013 Cone-Chr15:8457533 Cone9ag0341 Cone-Chr9:1498424 1.46E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g128 . . . . Bpe09g00254 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1028 Cone15ag1013 . . . . . Blo10g00737 . Bda12g00821 . . . . . . . . . . . Cpe14g00374 . . . . . . . . . . . . . . . . Csa04g00799 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003301 1 2 1 0 2 2 1 2 2 1 2 2 2 1 1 1 2 4 2 2 1 2 2 2 1 1 2 2 2 2 50