Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1019 ATGATAAGCAGCGGAGCAAGTGGCCTTCGTATATCTTCCCCGCGCGTTCCCTTCTCGCCGGAGAAGCCTCTACTCCGGTCAATTTCTTCGCCTTACGGTCTCTTCTGGCGCTGCCTCTTTTCAACCGTCTGCTCTGTTTCTGGTGAGAGGAAGATTAAGAAGGAGAAGGAGAAGGTGATCGTGATTTCTGGCCCTACCGGTGCAGGAAAGAGCAGGCTTTCTTTAGAGCTTGCCAAGCGTCTCAATGGTGAAATTATTAGCGCTGATTCCGTCCAGGTATATAAAGGTCTCGATGTTGGATCCGCGAAGCCATCTACAAGTGATAGAAAGGAGGTTCCACATCATCTGGTTGACATATTGCATCCATCTGAAGAATATTCCGTAGGCAAATTTTTTGAGGATGCGAGACAAGCAACTAGAAGCATTCATGAGAATGGACGTGTTCCAATAGTTACTGGTGGGACCGGATTGTACTTGCGATGGTTCATTTATGGAAAGCCAGATGTTCCAACAGCCAGTAGAGAGATTGCTGTGGAAGTATATACAGAGTTAGCAGATTTACAGAGACTAGATGATTGGGATGCTGCAGTAGAAGTAGTTGTCAAAGCAGGTGATCCAAAAGCTAAAAATGTAGCTATCAATGATTGGTATAGATTGCGTCGCAGCCTTGAGATTATCAAGTCCAGTGGATCTCCTCCATCTGCATTTCAAGTTCCATACGACTCTTTCAGGGACCAGTATGATTCTAGTTCAATAAGCCACTCTCATGATAGAGACGAACCTAAATCAAAGGAGTTAGACTATGAGTTCATTTGTTTCTTCCTATCTAGCCAAAGGCTTGATCTGTATAGATTAATTGACTACCGATGTGAAGATATGGTTTCAGGAGGTGGTGGGATTTTGTCGGAGGCATCATGGCTTCTTGATTCAGGTCTCCTCCCAAACTTAAATTCTGCTACTCGAGCGATTGGTTACAGACAAGCTATGGAGTACCTATTAAGGTGTAGAGAGGAAGGAGGAAGAAGTTCTCCTGGAGAGTTCCTTTCTTTTTTATCCGAATTTCAGAAAGTATCTAGAAACTTTGCTAAACGGCAATTGACATGGTTTCGGAATGAGCAAATATATCACTGGCTTGATGCTTCTCAACCTCTAGAAACGGTTCTCAACTTTATTGATGATGCATATCACGAGCAATGTGAAAATTTGGTCGTACCTGAATCACTTAAGATGAAGAAAGACATTTCAAATCGCCGGGAAGAATCTGAGCTAAAGGTGTATCGTACAAAAAACAGGCATTTCCTTTCTCGTCAAGATTGCTCGGAAGTTTTAGAGTGGATAAGAAGAACTCAAGGTCAAGCAAGTGTTCATCCTTCTCTCACTTGA 1383 43.17 MISSGASGLRISSPRVPFSPEKPLLRSISSPYGLFWRCLFSTVCSVSGERKIKKEKEKVIVISGPTGAGKSRLSLELAKRLNGEIISADSVQVYKGLDVGSAKPSTSDRKEVPHHLVDILHPSEEYSVGKFFEDARQATRSIHENGRVPIVTGGTGLYLRWFIYGKPDVPTASREIAVEVYTELADLQRLDDWDAAVEVVVKAGDPKAKNVAINDWYRLRRSLEIIKSSGSPPSAFQVPYDSFRDQYDSSSISHSHDRDEPKSKELDYEFICFFLSSQRLDLYRLIDYRCEDMVSGGGGILSEASWLLDSGLLPNLNSATRAIGYRQAMEYLLRCREEGGRSSPGEFLSFLSEFQKVSRNFAKRQLTWFRNEQIYHWLDASQPLETVLNFIDDAYHEQCENLVVPESLKMKKDISNRREESELKVYRTKNRHFLSRQDCSEVLEWIRRTQGQASVHPSLT 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8477689 8482083 + Conep15aG0104000.1 Cone15ag1019 454147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1019 460 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 57 421 IPR039657 GO:0006400(PANTHER)|GO:0009691(PANTHER)|GO:0052381(PANTHER)
Cone15ag1019 460 Gene3D - 168 238 - -
Cone15ag1019 460 Hamap tRNA dimethylallyltransferase [miaA]. 59 389 IPR018022 GO:0008033(InterPro)|GO:0052381(InterPro)
Cone15ag1019 460 Gene3D - 56 441 IPR027417 -
Cone15ag1019 460 FunFam tRNA dimethylallyltransferase 9 167 238 - -
Cone15ag1019 460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 195 IPR027417 -
Cone15ag1019 460 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 59 237 IPR018022 GO:0008033(InterPro)|GO:0052381(InterPro)
Cone15ag1019 460 Pfam IPP transferase 92 372 - -
Cone15ag1019 460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 393 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1019 K00791 - - vvi:100245121 651.358
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1019 Cone-Chr15:8477689 Cone17ag0538 Cone-Chr17:2706197 2.23E-20 dispersed
Cone14ag1033 Cone-Chr14:8713258 Cone15ag1019 Cone-Chr15:8477689 1.17E-301 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g135 . . Bda07g00322 . . . . . Cmo16g00451 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1033 Cone15ag1019 . . . . . . . . . . . Bma14g00258 . . . . Cma16g00419 . Car16g00384 Cpe14g00353 . . . . . . . . Cla07g00949 Cam07g1024 Cec07g1094 Cco07g1073 Clacu07g0993 Cmu07g0989 Cre07g1364 . . Chy07g00963 Cme07g01332
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008288 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 35