Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1020 ATGAGGATCGCCATGATCAGATCTGTGAAGTCAGCCCTAGAGAGGACACAGATTTCCTCACCGGCGTCGTCGCAGTACCTCTTTCGTCGGGGATTCGGGAGCGAGACCGTGCCGGAGAGGAAAGTCGTCGTCTTGGGAGCCGCCGGTGGGATCGGACAGCCCCTCTCGCTCTTGGTGAAGCTTAACCCTCTCGTCTCCAAGCTCGCTCTCTACGATATCGCCGGAACTCCTGGTGTCGCCGCCGACGTCAGCCATGTTAATACCAGATCTGAGGTTGCTGGTTATGCTGGTGAGGAACAGCTCGGCCAAGCTTTGGAGGGAGCCGATGTTGTGATTATTCCAGCTGGTGTTCCACGTAAGCCTGGAATGACCCGTGATGATCTCTTTAACATCAATGCTGGGATTGTTAAATCACTTTGCACTGCCATTTCTAAGTACTGCCCCCATGCCCTTGTTAACATGATTAGCAACCCTGTGAACTCCACTGTCCCAATTGCTGCTGAGGTTTTCAAGAAGGCAGGAACTTATGATGAGAAGAGGTTGTTCGGTGTTACAACTTTGGATGTTGTTAGAGCCAAGACTTTCTATGCTGGAAAGGCAAACGTCCCAGTTGCTCAGGTCAATGTACCTGTTGTTGGTGGCCATGCTGGCATTACGATTCTGCCATTATTTTCTCAAGCTACTCCAAGCGCCAATTTGTCTCATGATATTATTGAGGCTCTTACAAAGAGGACACAGGATGGAGGAACAGAAGTTGTGGAAGCAAAGGCCGGAAAGGGCTCTGCTACTTTATCCATGGCCTATGCTGGAGCACTATTTGCTGATGCTTGTTTGAAGGGGCTCAATGGCATTCCAGATGTTGTGGAATGTTCGTATGTACAGTCAAGCATCACTGAACTTCCTTTCTTCGCTTCGAAGGTGAGGCTTGGAAAGAACGGTGTGGAGGCAGTTTTGGATTTGGGTCCTCTCTCAGACTTTGAGAAGGAAGGCCTGGAGAAACTGAAGCCCGAGCTCAAATCATCAATTGAGAAGGGAATCAAGTTCGCAAACCAAAGTTGA 1059 49.67 MRIAMIRSVKSALERTQISSPASSQYLFRRGFGSETVPERKVVVLGAAGGIGQPLSLLVKLNPLVSKLALYDIAGTPGVAADVSHVNTRSEVAGYAGEEQLGQALEGADVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAISKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTTLDVVRAKTFYAGKANVPVAQVNVPVVGGHAGITILPLFSQATPSANLSHDIIEALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGIPDVVECSYVQSSITELPFFASKVRLGKNGVEAVLDLGPLSDFEKEGLEKLKPELKSSIEKGIKFANQS 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8483131 8485885 + Conep15aG0104100.1 Cone15ag1020 454148

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1020 352 ProSitePatterns Malate dehydrogenase active site signature. 184 196 IPR001252 GO:0006108(InterPro)|GO:0016615(InterPro)
Cone15ag1020 352 NCBIfam malate dehydrogenase 41 350 IPR010097 GO:0006099(InterPro)|GO:0030060(InterPro)
Cone15ag1020 352 SUPERFAMILY LDH C-terminal domain-like 184 350 IPR015955 GO:0003824(InterPro)|GO:0016616(InterPro)
Cone15ag1020 352 Gene3D - 185 351 IPR015955 GO:0003824(InterPro)|GO:0016616(InterPro)
Cone15ag1020 352 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 185 348 IPR022383 GO:0016616(InterPro)
Cone15ag1020 352 PANTHER MALATE AND LACTATE DEHYDROGENASE 35 350 - GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0030060(PANTHER)
Cone15ag1020 352 FunFam Malate dehydrogenase 38 184 - -
Cone15ag1020 352 PIRSF Lac_mal_DH 36 350 IPR001557 GO:0016616(InterPro)|GO:0019752(InterPro)
Cone15ag1020 352 Gene3D - 39 184 - -
Cone15ag1020 352 CDD MDH_glyoxysomal_mitochondrial 41 349 IPR010097 GO:0006099(InterPro)|GO:0030060(InterPro)
Cone15ag1020 352 FunFam Malate dehydrogenase 185 351 - -
Cone15ag1020 352 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 41 183 IPR036291 -
Cone15ag1020 352 Pfam lactate/malate dehydrogenase, NAD binding domain 41 183 IPR001236 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1020 K00026 - - gmx:100777296 567.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1076 Cone-Chr10:7476562 Cone15ag1020 Cone-Chr15:8483131 1.91E-54 dispersed
Cone13ag0070 Cone-Chr13:426103 Cone15ag1020 Cone-Chr15:8483131 2.43E-123 dispersed
Cone15ag1020 Cone-Chr15:8483131 Cone3ag1061 Cone-Chr3:29323152 2.59E-143 dispersed
Cone14ag1034 Cone-Chr14:8720462 Cone15ag1020 Cone-Chr15:8483131 9.75E-233 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g136 . . . . Bpe09g00251 . Bma10g00480 Bma13g00935 Cmo16g00450 Cmo04g00606 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1034 Cone15ag1020 . . . . Blo07g00962 Blo10g00740 Bda05g00784 . . Bpe03g00851 . . . . . Cma04g00566 Cma16g00418 Car04g00537 Car16g00383 Cpe14g00352 Cpe01g00511 . . . . . . . Cla07g00948 Cam07g1023 Cec07g1093 Cco07g1072 Clacu07g0992 Cmu07g0988 Cre07g1363 . . Chy07g00962 Cme07g01331
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004201 2 1 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 43