Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1021 ATGGCTTCAGGGCAACTACGTGGTGGTGACGGTGCGAGGGAGAATCACAGAAAACACCAGAACAAGGCGAAGAATCCGAGCTATCATCTTCCTCAACGATCCTCCTCACAAGCTGTAGGAACTACTACTACTACTGCCTCTGCTCGGAACGACAACTCGGACGATTCCTCGAGCGAAAGCCCGGAGGCGGATCGGTCTAATCCAAGGTACGATAACTGGGTTAGGATTAGTTTAAAGTCCAAGTCTAAAGCTGGTGTTAAGGAGCTTAGGGGAAAGTTGGAGAGTGAGCTTGATCAAGTTAGGGTTCTTGTAAAAAAGCTTGAAGCTCAGGAGTTTCAGTTAACTAGTGGCGTTGGTGGTTATAGTCAATCACAGTTCTCGTCCAATAATGTCGTAGAGAATGTTCGACCCAAGATGGGTTCCACTGGAATTGGTAAAATTGTGGAGAAGGAAAAGAAGAAGATGGTTAAGACCAATAATATGAATGACGAAAACCAACCCGAGCATGTTCCAAGAAAGGAGAAGTTCCCAACCAATAAGAAGAATGAGCCACCTATACGGGAACCCGGGTACGAGTTTGGGATGGATAAGAGAACAAGTCCATTATTTCAAAGTTGTAGTAATTTGCTCGAGAATTTGATGAAGCATAAGTATGGATGGGTGTTTAACATGCCGGTAGATGCCAAAGGATTAGGGCTTCATGATTATCATAGGATTATAAAGCAACCCATGGATTTGGGGACGGTCAAGACGAGACTAAATAAGAACTGGTATAAGTCTCCTAGAGAATTTGCAGAGGATGTAAGACTTACATTTAGTAATGCCATGTTGTATAACCCGAAAGGGCAAGATGTATATCATATGGCAGAGCAGTTATCTAAGATGTTTGAAGATAAATGGACAAGTATAGAGGTGAAGTATCATCTGAAGAAGAAGAAATCCCGAGCTGATAGTAGTTCCGTTATGCCTAAACAAACTTTGAAAAATCCACCAATTTCGAAAACTGTTCCAAGTTCTACAGCTCCTCCTCCTTTATCAGAAGTGAGGAATACTGGAAGATCAGAATCTATGACTAAGCTGAATCCAGCTAGAGCAGAACCAATGTCTAAGCCCATAGATTCCGCATTGAAACTGGGAAATTTGGGTAATCATGGTAAAATGGTGGTTCCAAAGAAGCCTAAAGCTAAGGACCCGGATAAGAGGGATATGACTTTTGAAGAGAAGCAGAGGCTTAGCTTGAGTCTTCAGAGTTTGCCTTCTGAAAAACTGGATAATATTGTTCAGATAATTAAGAAGAGGAATCAAGGGCTTTGCCAGAATGATGATGAGATTGAGGTGGATATTGCTAGTGTTGATCCAGAAACTCTTTGGGAGCTTGATAGATTTGTGACTAATTATAAAAAGAGCTTGAGCAAGAACAAGAGGAAAGCTGAAGTTGCTGGTCTAAGTAAAGACGAAGAAGAAGTAGAAGAAGAGGAAGGTCTTTCGGCTAACCTGAATCTAGAGGTAGCCTCTGCGAGGGTACACAAAGATAGTAATCCAGATACGGAGAGCGATAGTGCCCCTGCATTTGGATCAGATAGGAGTCACTCAGCTAGTGGTTGA 1605 42.37 MASGQLRGGDGARENHRKHQNKAKNPSYHLPQRSSSQAVGTTTTTASARNDNSDDSSSESPEADRSNPRYDNWVRISLKSKSKAGVKELRGKLESELDQVRVLVKKLEAQEFQLTSGVGGYSQSQFSSNNVVENVRPKMGSTGIGKIVEKEKKKMVKTNNMNDENQPEHVPRKEKFPTNKKNEPPIREPGYEFGMDKRTSPLFQSCSNLLENLMKHKYGWVFNMPVDAKGLGLHDYHRIIKQPMDLGTVKTRLNKNWYKSPREFAEDVRLTFSNAMLYNPKGQDVYHMAEQLSKMFEDKWTSIEVKYHLKKKKSRADSSSVMPKQTLKNPPISKTVPSSTAPPPLSEVRNTGRSESMTKLNPARAEPMSKPIDSALKLGNLGNHGKMVVPKKPKAKDPDKRDMTFEEKQRLSLSLQSLPSEKLDNIVQIIKKRNQGLCQNDDEIEVDIASVDPETLWELDRFVTNYKKSLSKNKRKAEVAGLSKDEEEVEEEEGLSANLNLEVASARVHKDSNPDTESDSAPAFGSDRSHSASG 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8487324 8490533 - Conep15aG0104200.1 Cone15ag1021 454149

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1021 534 Coils Coil 90 110 - -
Cone15ag1021 534 Gene3D - 396 477 IPR038336 -
Cone15ag1021 534 Pfam Bromodomain 206 291 IPR001487 GO:0005515(InterPro)
Cone15ag1021 534 Coils Coil 472 502 - -
Cone15ag1021 534 CDD Bromo_plant1 202 300 IPR037377 -
Cone15ag1021 534 MobiDBLite consensus disorder prediction 55 69 - -
Cone15ag1021 534 ProSiteProfiles NET domain profile. 393 474 IPR027353 -
Cone15ag1021 534 Pfam Bromodomain extra-terminal - transcription regulation 403 464 IPR027353 -
Cone15ag1021 534 MobiDBLite consensus disorder prediction 166 193 - -
Cone15ag1021 534 MobiDBLite consensus disorder prediction 1 73 - -
Cone15ag1021 534 ProSiteProfiles Bromodomain profile. 214 286 IPR001487 GO:0005515(InterPro)
Cone15ag1021 534 Gene3D - 187 321 IPR036427 GO:0005515(InterPro)
Cone15ag1021 534 MobiDBLite consensus disorder prediction 517 534 - -
Cone15ag1021 534 SMART bromo_6 195 305 IPR001487 GO:0005515(InterPro)
Cone15ag1021 534 SUPERFAMILY Bromodomain 179 303 IPR036427 GO:0005515(InterPro)
Cone15ag1021 534 PRINTS Bromodomain signature 217 230 IPR001487 GO:0005515(InterPro)
Cone15ag1021 534 PRINTS Bromodomain signature 233 249 IPR001487 GO:0005515(InterPro)
Cone15ag1021 534 PRINTS Bromodomain signature 267 286 IPR001487 GO:0005515(InterPro)
Cone15ag1021 534 PRINTS Bromodomain signature 249 267 IPR001487 GO:0005515(InterPro)
Cone15ag1021 534 MobiDBLite consensus disorder prediction 470 534 - -
Cone15ag1021 534 PANTHER OSJNBA0053K19.4 PROTEIN 54 503 - -
Cone15ag1021 534 MobiDBLite consensus disorder prediction 25 54 - -
Cone15ag1021 534 MobiDBLite consensus disorder prediction 312 401 - -
Cone15ag1021 534 MobiDBLite consensus disorder prediction 319 358 - -
Cone15ag1021 534 MobiDBLite consensus disorder prediction 161 193 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1021 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1021 Cone-Chr15:8487324 Cone3ag1451 Cone-Chr3:33185721 1.28E-90 dispersed
Cone14ag1035 Cone-Chr14:8723793 Cone15ag1021 Cone-Chr15:8487324 5.56e-318 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g137 . . . . . . Bma10g00481 . Cmo16g00449 Cmo04g00605 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1035 Cone15ag1021 . . . . . . Bda05g00783 . . Bpe03g00850 . . . . . Cma04g00565 Cma16g00417 Car04g00536 Car16g00382 Cpe14g00351 Cpe01g00510 . . . . . . . Cla07g00947 Cam07g1022 Cec07g1092 Cco07g1071 Clacu07g0991 Cmu07g0987 Cre07g1362 . . Chy07g00961 Cme07g01330
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003323 2 4 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 9 1 48