Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1024 ATGAGTCCAGCTGACTGTTTTTGGACACTAATTAAGCTACGAAAAGCAAAGAAGCGTGCTTGGACAAATGAAAAAATAAGAGAACATTCAAGTACAAAAAACTTATCTGATGGAGGTACAAGGTCGCTTGAACATATAGCTGCAACCCGGATTCAAACCGCATTTAGGGCATTCGTGGCAAGAAAAAAGGGGTGTAACGGCGTAAAGCGGCGTCTGGCGACATTCCCGGTGAGAATCCAAGAATTGATTGAAGGTGATATCATGGGAAGAAAGCAAGCGTTGATTGCACTAAGTTACATAGATTCTTGGAGCAAAATACAGCAAGAAATTGGGTTTCGCCGATTGTTCATGGTCACTGAAGATCGGCTTAGGCAAAAGAGAGTCCAAAATCATCTCAAGCTTGAGGCCAAGCTTCATGAGATTGAGGTTGAATGGTGTAGTGGGACTGAAACAATGGAGGAAATTCTTTCAAGGATTCGACAGAAAGAAGAAGCTGGAGTCCGTCGCGAACGAGCAATGGCATATGCCTTCTCTCATCAGTGGAGGGCAAACTCAATATTACAACTAGGCCCAGCAGCTACAATGAGTATTGACAAGGAAAACTGGGGATGGAGCTGGAAAGAACGATGGATCGCGGCCCGCCCGTGGGAAGTCCGCGCCCGAGATCACCCGACAGTTCCAAAGAAAGTACAAACCAAATTATTACATGGAAGCAAAATGGACAAAAGGAATCACATACAACCAGAGCTGAAAACAGCATCATCATCCGCTTCAGCTAAGAAACTAGCTTTGTCAAATGGGAAGGGAACAATAAAACACAAAACAAGATCATGTGCTCTATCCAATGCCTGA 852 44.25 MSPADCFWTLIKLRKAKKRAWTNEKIREHSSTKNLSDGGTRSLEHIAATRIQTAFRAFVARKKGCNGVKRRLATFPVRIQELIEGDIMGRKQALIALSYIDSWSKIQQEIGFRRLFMVTEDRLRQKRVQNHLKLEAKLHEIEVEWCSGTETMEEILSRIRQKEEAGVRRERAMAYAFSHQWRANSILQLGPAATMSIDKENWGWSWKERWIAARPWEVRARDHPTVPKKVQTKLLHGSKMDKRNHIQPELKTASSSASAKKLALSNGKGTIKHKTRSCALSNA 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8518263 8520064 - Conep15aG0104500.1 Cone15ag1024 454152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1024 283 ProSiteProfiles IQ motif profile. 44 73 - -
Cone15ag1024 283 PANTHER IQ-DOMAIN 5-RELATED 30 256 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1024 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1024 Cone-Chr15:8518263 Cone5ag1677 Cone-Chr5:11930675 5.99E-62 dispersed
Cone1ag0191 Cone-Chr1:1095694 Cone15ag1024 Cone-Chr15:8518263 1.35E-59 wgd
Cone14ag1038 Cone-Chr14:8768237 Cone15ag1024 Cone-Chr15:8518263 2.27E-159 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g140 . . . . . . Bma10g00484 . Cmo16g00447 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1038 Cone15ag1024 . . . . Blo07g00960 . Bda05g00781 . . Bpe03g00849 . . . . . . Cma16g00415 . Car16g00380 Cpe14g00349 . . . . . . . . Cla07g00945 Cam07g1020 Cec07g1090 Cco07g1069 Clacu07g0989 Cmu07g0985 Cre07g1360 . . Chy07g00958 Cme07g01328
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone5ag0328 . 91 268 IQD Protein Family AT3G09710 53.7 1.9e-48 191.0
Cone18ag0502 . 1 459 IQD Protein Family AT3G52290 53.2 6.7e-93 338.6
Cone5ag0328 . 73 293 IQD Protein Family AT2G26410 52.0 6.2e-48 189.5
Cone18ag0162 . 1 392 IQD Protein Family AT3G22190 59.9 3.4e-97 352.8
Cone11ag1428 . 1 385 IQD Protein Family AT3G22190 59.1 7.3e-92 335.1
Cone1ag0388 . 1 397 IQD Protein Family AT3G22190 53.0 1.4e-90 330.9
Cone5ag1312 . 1 397 IQD Protein Family AT3G22190 51.6 2.3e-85 313.5
Cone4ag1669 . 2 415 IQD Protein Family AT2G26180 57.2 2.9e-101 366.3
Cone20ag0275 . 4 391 IQD Protein Family AT2G26180 58.8 2.5e-100 363.2
Cone17ag0933 . 4 391 IQD Protein Family AT2G26180 57.0 7.5e-97 351.7
Cone14ag1038 . 44 231 IQD Protein Family AT2G33990 54.5 1.3e-43 174.1
Cone14ag1038 . 19 228 IQD Protein Family AT3G15050 55.2 2.3e-51 199.9
Cone15ag1024 . 36 229 IQD Protein Family AT3G15050 56.2 5.0e-51 198.7
Cone18ag0985 . 1 527 IQD Protein Family AT4G00820 50.4 4.6e-115 412.5
Cone4ag0762 . 1 383 IQD Protein Family AT3G16490 50.3 3.0e-63 240.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011558 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 30