Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1027 ATGATCATAATTAGAAGCAAAAGGGCATCCATTTTCTTCTTGCTAGTTTTTTCAGTACTAACTGTTGAAATTAAGGGCCGTTCTCTGAAACATGGTTCTCATCGGCATCATCATCATGAAGAACAAAATTCTGTAATTTCCGATGGCGTGGACGAAGAAGGCAATGATTTCAAACAGATTTCTAATATATTACTTGTCAAAAGTAATTTCATGTATAGTAATTTTTCATTATTTTCTCCGATCGAAGAAGAAGAAGAAGAGTGTGAGCAAATGTATGGATTCTTGCCTTGTTCAACAAATATATATGGGCATTTATTCCTTATAATCGTGTATGAATATCTCTTGATAAAAGGAGAGTCTCTTGCTGCGGCTGGAGGTGAGAAGATTTTCAAGATTCTGGGTACAGGTGTTTTTGGTGCTAGTGCTTTTCATGTCCTTAGTGCTCTTCCTGAGGCCTTGATTCTTCTCGCTTGTGGGCTTCTGAGCAGTGAAGAGGTAGCAGAAGAGTATGTATACACAGGAGTTGGAATGTTGGCTGGATCTTCCATTTTTCTTCTGACACTTGTTTGGGCAACTTGTGTTCTTGTCGCCTCTCAAGACTTTTCAAATCCTTCTAATTCATCCCCACTTTCTCTTCAAACCCTTAAAGCAAGGATATTAGGATATGGAGTTGATATAGACAAAGAAACAAGTTACACTGCGAGGACCATATTCATCACTGTCATTCCTTTTCTACTCTTGCAAATCCCTAGAATCTTCAACCTGTCCTCTGAGGGGACCGTATTTGAGCCTTGGGTTCAAGAAAGAAGACTAGAATTTCTAAAACATCAACATTTGACTGAGAGAGTTTTACAACATGTTCAAAAACATGCACTTCGAAGACTCCTCACACATGATGGGGCCCCTAATGTAAGAGCTATAAGAAGGCTATTTAAGGAAATAGATGAAGATGGTGATGAAGTTGTGTCATATTCTGAAGTGAAAGAACTATTCCTTCAAATAAAAGGTTTAGAAACAGGTAGGGATGATACGGATCAAGCAATTTCAGAGGCAATGAAAATGTTTGACCTTGACAGTGACCAAAAAGTTAACGAGGATGAATTCGTCAGTGGTTTTACAAAGCTGCTCGATTCGGAGAATCTAGTAGGAGATATTAATCGGCAATATGATTCTAGAAAATCACTAACGAATATTTATCAGGTAATTCATCCTTGGCTTCAAAATAAAAAGAAAGAGAAGGAAATAAGGAAGAATTTAATGCTACAAATATTAAAACAATCGCAAAGCAATGTACTAGAAAGCCATGTCACGGAAGATGGAGCACCTAATATTCCTTTCATTAGAAGAATGTTTGACCGAATCGATCAAGATGGAGACAACAAAATATCGCAATCTGAGCTGAAAAAAATGATTGCAGATGTCAAATTTGGTGGTCAGGTTAGTTTAGATGTGGATGAAGCTGTTTGGAAAATAGTTGAAGAACTCGATGGAAATGGAGATAGGGAAATTGATGAAGACGAATTCATTAATGGGATTTGCAAGTTGTTCGATCGATCAAACAAGCTGCAAGCTCCTGCCTCCCTTGAGCTCCAAGATGATGTCTACCAAAAAACATGGGAAGAAACAGACAAGCTGGTAGGTGATGAAACAAAGAGCAATGGAGTTGTTGATAGATCAATATGGACTTGCACAAAGGCTATAATGCAATTGATTATTGGAATTTTTGCTTTAGGGCTTCTCGCCGAACCTCTTATTCATAGTGTTGAGAATTTCTCCAACTCTCTAAATATAGCATCCTTCTTCGTATCTTTCATTTTGGTCCCTTTATCCACCAATTTTCGTGCTGCAATTGTGGCGATCACGGCTGCAAATCGCAGGACTCCGAGAACGACTTCTTTGACATTCTCTGAGATTTACAGTGGAGTGTTCATGAACAACATTCTTGGAATTTCAGTACTTCTGTTCCTAATTTACGTACGAGGAATGACATGGGATTTCTCCGCGGAGTTTCTAATAGTTCTATTAGTGTGTGCTCTAATGGCTTCCACTACCGGTTTTCACAACAAATTCCCGGTCTGGACTTGTTTCGTGGCCTTCTTGTTATACCCTTTGTCTTTACTAATGGTCTACATTCTCAATTATGTTCTCGATTACGTTTAA 2160 38.33 MIIIRSKRASIFFLLVFSVLTVEIKGRSLKHGSHRHHHHEEQNSVISDGVDEEGNDFKQISNILLVKSNFMYSNFSLFSPIEEEEEECEQMYGFLPCSTNIYGHLFLIIVYEYLLIKGESLAAAGGEKIFKILGTGVFGASAFHVLSALPEALILLACGLLSSEEVAEEYVYTGVGMLAGSSIFLLTLVWATCVLVASQDFSNPSNSSPLSLQTLKARILGYGVDIDKETSYTARTIFITVIPFLLLQIPRIFNLSSEGTVFEPWVQERRLEFLKHQHLTERVLQHVQKHALRRLLTHDGAPNVRAIRRLFKEIDEDGDEVVSYSEVKELFLQIKGLETGRDDTDQAISEAMKMFDLDSDQKVNEDEFVSGFTKLLDSENLVGDINRQYDSRKSLTNIYQVIHPWLQNKKKEKEIRKNLMLQILKQSQSNVLESHVTEDGAPNIPFIRRMFDRIDQDGDNKISQSELKKMIADVKFGGQVSLDVDEAVWKIVEELDGNGDREIDEDEFINGICKLFDRSNKLQAPASLELQDDVYQKTWEETDKLVGDETKSNGVVDRSIWTCTKAIMQLIIGIFALGLLAEPLIHSVENFSNSLNIASFFVSFILVPLSTNFRAAIVAITAANRRTPRTTSLTFSEIYSGVFMNNILGISVLLFLIYVRGMTWDFSAEFLIVLLVCALMASTTGFHNKFPVWTCFVAFLLYPLSLLMVYILNYVLDYV 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8531435 8536812 - Conep15aG0104900.1 Cone15ag1027 454155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1027 719 CDD EFh 307 373 IPR002048 GO:0005509(InterPro)
Cone15ag1027 719 Gene3D - 381 525 - -
Cone15ag1027 719 ProSitePatterns EF-hand calcium-binding domain. 455 467 IPR018247 -
Cone15ag1027 719 ProSiteProfiles EF-hand calcium-binding domain profile. 442 477 IPR002048 GO:0005509(InterPro)
Cone15ag1027 719 MobiDBLite consensus disorder prediction 31 50 - -
Cone15ag1027 719 Pfam Sodium/calcium exchanger protein 566 710 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cone15ag1027 719 ProSitePatterns EF-hand calcium-binding domain. 496 508 IPR018247 -
Cone15ag1027 719 SMART efh_1 487 515 IPR002048 GO:0005509(InterPro)
Cone15ag1027 719 SMART efh_1 446 474 IPR002048 GO:0005509(InterPro)
Cone15ag1027 719 SMART efh_1 347 375 IPR002048 GO:0005509(InterPro)
Cone15ag1027 719 SMART efh_1 306 334 IPR002048 GO:0005509(InterPro)
Cone15ag1027 719 CDD EFh 447 512 IPR002048 GO:0005509(InterPro)
Cone15ag1027 719 SUPERFAMILY EF-hand 303 513 IPR011992 -
Cone15ag1027 719 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 86 257 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Cone15ag1027 719 ProSiteProfiles EF-hand calcium-binding domain profile. 483 518 IPR002048 GO:0005509(InterPro)
Cone15ag1027 719 ProSitePatterns EF-hand calcium-binding domain. 356 368 IPR018247 -
Cone15ag1027 719 Gene3D - 258 380 - -
Cone15ag1027 719 Pfam EF-hand domain pair 447 512 IPR002048 GO:0005509(InterPro)
Cone15ag1027 719 Pfam EF-hand domain pair 306 372 IPR002048 GO:0005509(InterPro)
Cone15ag1027 719 ProSiteProfiles EF-hand calcium-binding domain profile. 343 378 IPR002048 GO:0005509(InterPro)
Cone15ag1027 719 ProSiteProfiles EF-hand calcium-binding domain profile. 302 337 IPR002048 GO:0005509(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1027 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1027 Cone-Chr15:8531435 Cone6ag0181 Cone-Chr6:858657 2.06E-87 dispersed
Cone15ag1026 Cone-Chr15:8524774 Cone15ag1027 Cone-Chr15:8531435 2.61E-53 tandem
Cone15ag1027 Cone-Chr15:8531435 Cone15ag1028 Cone-Chr15:8541659 4.20E-56 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g143 . . . . . . . . . . Cma01g01235 . . . . . Cpe02g00681 . . . . . . . Cla11g01724 Cam11g1793 Cec11g1814 Cco11g1820 Clacu11g1952 Cmu11g1762 Cre11g2171 Cone6ag0181 . . Cone15ag1027 Lsi04g02031 Csa04g02303 Chy07g00038 Cme07g00549 . . . . . . . . . Cmo01g01288 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030073 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 2