Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1035 ATGCGATTTTCTTCCAAAGAAAGTGGTGATCGGACGTGCTCTAGGCTCCGGAAGAAGCGGAAGAGGCTTGATGCCATTTGTGAGAAAGAGTATAGTAGAAATCATGGGGATTTGAATGAGGGTAGTGGTAGAAGGGGAGGGAATGTGACTGATGATACAGAGCTTAGACGGAGTTCTAGGGTTCGTAGGGCCCCGGTTTTGCTTGATGTTTCGCCACAACCGAAGAGGCGGAGGATTCACAAGAATGTGGCTTCGAGTGTTAAGAAGAGTGCTAAGAGCTCAGCTTGTGTGAAGGAGGAGAATACACAAGATTTGGAGACTCCAGGGATTTGGGGATCGAGGTTGAGAGCAAGAAGTGGAAACTTGAGGTTCAGTCTGGAGGAGGAAAGAGGTTTGGGGAGAGGTAAGAGGAAGCTTTTTAAAGAAGAGAGAGTTAAAGATGAAGAGAATTTGGTGGAGGTGGAAATGGATGGGGACAAAGGAGATATGGAAGGTGGGAATTCTAGAGTTGTGAAGGCAGGGAGACGTGGAAAGATGAAATCTATGAATTCTTCATGGGACAGAGACAAAAGCGAGAAGAGTATAGAAGATGAGATCGAGAAGGAAGAAATGGAGGACACAGGGAGCGAAAGTGAGGAGGGTTTAGAAGATGACACTGAGAAGGAAGATATACTGGGGAACACGGGGAGCGAAAGTGAGGAGAGTATTCAAGATGAGAATGAGGGGGGAGAAATGAAGGTAATGGGGAACAATGGTGAGGAGGTTATGGAAAATGAGAATGAGAGAGAAGACATGGTGGTAATGGGAAACAATGGTGAGGATGGTATAGAAGATGTGAATGAGAGAGAAGAAATTGTGTTGATGGGGAACAATGGCAAGGAGGCTATGGATGATGAGATTGAGAGGGAGGAAATGGTGGTTTCTGAGAGCAAAGGCCAGGGGAGTGCTTTAATTTCGAGTAGTCAAATGGGTGTTGGAAATGAAAGAGAAATAGTAGCTGGCAAGCTTTCTCGGGACATTGACAAAGGGGATAAAGAAATTTCAGGTGGTTTGTATCCAGAAGGGACTGGTATTGATAATGATAATGTAGAGACAGTGGATAATGAGGAACTTGTGGAATGTGGGCAGAAGGAGCAGGAAGAAGTAGAATGTGCAAAGGAAGATGTAAATCAAACAAATGATGAAGTACCTGGTGAAGTTTCAATGAAGAAAGAGGCAAATGGAGGTACATGCGTGAGGAAGGATGTTGATGTTGACAAACTTCATATAAATTCCTTAGAACATGAGAATGGTCTGAACATGTCTAGTCGACTGCCTAGCAAGCAATGCATTATAGAGGGAAGAATGTGTGGTTTGTGTGGTGGGGGTATTGATGGAAAACCGCCCAAAATAGTTCAGGACATGGGTGAGAGTGAGAATGAGACATGGTGTGATGCTTCAGCTCTAGAAGAACCTAACTATGACATATGGGATGGTTTTGGTGAGGAACCTGGATGGCTTGGACGTCTCCTAGGTCCTATAAATGATCGATATGGGATTGCTGGAATATGGGTCCACCAACATTGTGCTGTATGGAGTCCAGAGGTTTATTTTGCTGGTTTGGGATGCTTAAAAAATGTGAGGGCTGCACTTTGCAGGGGAAGAGCATTGAAATGCACCCGTTGCGGGGGGCCGGGAGCTACTATAGGATGTCGTGTTGATCGGTGTCCAAGAACTTACCACTTGCCTTGCGCTCGTGCTTATGGTTGCATTTTTGATCATCGGAAGTTTCTCATTGCCTGCACTGATCATCGGCATATCTTCCAACCTCATGGCAATCAATATCTAGCCCAAATAAAGAAAATGAAGGCTAAGAAAATGAAGATGGAAGTTCGGAAGGTGTCAAATGATGCTTGGCGAAGGGACATTGAAGCAGAAGAGAAGTGGTTGGAGAACTGTGGTGAGGATGAAGAGTTTTTGAAACGAGAGAGCAAGAGGCTTCATCGAGATTTGCTGAGAATTGCTCCTGTGTACATTGGAGGCTCTGGGTCAGAAGGTGAAAACCTATTTCAGGGTTGGGAATCTGTTGCTGGGCTCCAAGATGTTATCCGATGCATGAAAGAAGTTGTCATCTTACCTCTTCTCTATCCCGAGTTTTTTGATAATCTGGGAATTACTCCTCCTAGAGGAGTTCTTCTTCATGGATATCCTGGAACTGGTAAAACTCATTTTGTAAGAGCCTTGATAGGTGCTTGTGCTCGTGGCGATAAACGAATAGCATATTTTGCCCGAAAAGGTGCAGATTGTTTAGGGAAATATGTTGGTGATGCTGAGCGACAGCTAAGACTCTTGTTTCAGGTCGCTGAGAAATGTCAACCTTCTATTATATTCTTTGATGAGATAGATGGTTTGGCACCTCAAAGAACGAGGCAGCAAGATCAAACTCACAGCTCAGTTGTGTCAACCTTGCTTGCTCTACTAGATGGTTTGAAATCTCGTGGTTCTGTTGTAGTCATTGGTGCAACTAATCGTCCTAATGCTGTCGATCCAGCATTAAGACGGCCTGGAAGATTTGATAGAGAGATTTACTTTCCTCTTCCATCCATGGCTGACAGGGCTGCCATTCTCTCTCTTCACACTCGAAAGTGGCCAAAACCAGTTGGAGGACCTTTGCTCAAGTGGATTGCAAAGAAAACTGCTGGTTTTGCTGGTGCTGATCTTCAGGCTCTATGTACTCAAGCAGCTATTATTTCTTTGAAGCGGAATTTCCCTTTGCACGAGGTTTTATCTGCTGCTGGAGTGAATGGCTCCCTTGGTAAACGCCCTACTCTTCCTGCCTTTGCTGTGGAGGAGAGAGATTGGTTGGAGGCTATATCATGTGCTCCTCCCCCATGCTCTTGTAGAGAAGCTGGAATGGCCGCTAATGGTGTAGTTTCCTCTCCTCTTCCCTCCCACCTTCTTCCTTGTCTGATAAAGCCATTATCAACTTTACTTGTTTCCCTCTATATTGACGAACGTATCTGGTTGCCGACTACTCTTTCAAATGCTGCTATAACAATTAAAAGTGTAATAGTTTCTGCTTTAGATAAAAAGAAAATGGCTAGTAATCATTGGTGGTCTTATGTTGATAACTTTATTCAAGAAGCTGAGATAGCAAAGGAAATTGAGGGAAAGCTTTCATCTACTGGTATATTACTTGGAGATACAAGCACTTCAGACCTTGGTGCCATTAATCAGGATATTGACAACAAGAAGTTTAAACCTTCCATAAAGCATAATGATGAATCTGGTACTTGTTCTATAGAACACCTATCATTTGCCTCAAAAAATAAGTCAGGCTTTCGTATACTGATTGCTGGAGGTCCCAGATCTGGGCATAGGCACCTTGCATCTTGCCTTCTTCACTGCTTTGTTGGAAATAGTGAAATTTTAAAGGTTGATTTAGCTTCAATTTCACAAGATGGACATGGAGACGTGGTGCAAGGGATAGCACAGATATTAATGAAATGTGCTAGTGTGCGATCATGCATTGTATTCATGCCTAGAATCGACTTATGGGCTGTTGAGACGTGTCGTCAAGTCACCGACGAGGAGGGTGATACTTTTTCAACTGATGATGAATCTCCTGTGAAGGAAGAATCTTTTGTTAGACCTAGCCAGTTCAGCAAAAAAGAAGATGAGAATAGTTTAGAGGAAGCTGAATTTTGTGCTTCGCACGCCTGGTGTTCATTTGTTGAGCAAGTGGAATATTTGTGTGTGTCTTCATCCTTGATGATTCTGGCGACTTCAGAAGTTCCATTTCCTCTACTTCCGGAAAGAATAAGGCAGTTCTTCAGAAATGACATTTCAATCTGCAGTCAGACTATTCTGTCTGAGCACACAGTACCTAGATTCTCAGTGCAGATTGATGGGAAGTTCAATCGTGATATAGTAATCAATCTATCTGCAGCAGAGTTGTCGAGGGATATAGTCCAATTGCTTGTTCAATTGATTCACCAAAAATCGCATATTAATCCACCTCTGACATGTAGTAATTACAGAGCTTATTTTATTGAAGGCAATACTGAGAGAGTATTGTGCAATGGACAAGAGGATGTAGTAAAACCTCCTAATGAACCTTCTTCACCGCCTAACAAAGGGAAATCAACCTTGCATTTAGCTATATCTACGTTTGGGTATCAAATTCTGCGATACCCACATTTTGCAGAACTTTGCTGGGTTACATCGAAGTTAAAAGAAGGCCCATCTGCAGACGTAAGTGGGCCTTGGAAGGGATGGCCTTTTAACTCTTGTATTACCCGTCCTATGAACTCACTACAAAAGGTATCATTCAATAATGGTGTAAGCAATGTTAAAGCTAAGGAAAAATCCGGTATAGTAAGAGGCCTAGTTGCTGTTGGTTTATCAGCATATCAAGGAGTCTACACATCACTAAGGGAGGTCTCCTCTGAGGTAAGGAAAGTTCTTGAACTTCTAGTCGGACAAGTTGATATGAAAGTCAATGCTGGGAAAGACAGGTATCAATATGTCCGTCTTCTATCACAAGTCGCTTATCTGGAAGACATGGTTAATAATTGGGCCTTCACACTGCAGAGCTTAGAGCATGGTGCATCAAGAATAGTGTTAAATCCAGACAAAGAACATGTTTGTGATGATAATGGGATTCAAGGCAAGGAAAACAACAATGATGTTTCGCCCAACAGTTCCCATTTACTAGAAACAGAAGAAGGTTGTTCTAAAGCATGTACTGATGACTATGAGAAAGTTGAATGTGTTAATTTGTCCAAGGAAAATGGGGGGCATTTAGGTCACTATTCCTCTGCACCTGATGTGTCCACCCATTATGATGCAGCTGCTCCTACTGATCAATCAGTTGATAATGTTTCCGTTGAGCGCAATGGAACAATATTCGGTCCATATGAGGTGGGGAATTTGCAACAAGCAAATGGAATCGGGCCTAGAGATTATGTTCTCATTTCTGAAAATGGTCTTAGTTCTGGTTATAAATTATCCGGGGACTTAAATCTCAGCACGAAAAATAATGGGTCATGTTCCACAGAAACTGGTACTAGATCTGATGATTCCAGTGAGCCTCAAACAGGTGACCAGAATGTGGACCACACTTGTTCTTCAAGTAAAACCGGTGTGTCTACTAGCTCTGAGGGGATAACATGTTCGTTTCATTGCTGTTCTGATTGCCTAAGCATCCTTCATGGCTGGACTAAGAAAATTCTCTCCAATGAATTTGGATCGAATAGAACCGTCTTGACTGCAGAGGATGTTCATGATGTGGTAGCGACATTATATTTGGATCTTCTTGCTGCTGTAAGACAAGTACTTGTTACTGGAGATATAAGGAATTTGCTTGACCAAAACCTAAGACAGGGAAATTCGGATTCAAGAGCATGTCAGTGTAAAAATTCAAAGAGCATGGATTTCACGCCGAGAGAATGCATTTGTCATGAGCAGACCAAGAGCACATTAAGTGCAGAAGCAAATACCTCCCTTTTAAATTCGAAGTTTATTTTTCGAGATGGTGTGTTGGTTAGTTTAGAACCTGAGAAGGGTGACCCTTTACATTGTAGATATGAGAATCTATGCCTCTGTTCACTTATTGAGTTGCCAGGACCGACAAAATGGCACACATTCTCATCTAATTGA 5640 42.64 MRFSSKESGDRTCSRLRKKRKRLDAICEKEYSRNHGDLNEGSGRRGGNVTDDTELRRSSRVRRAPVLLDVSPQPKRRRIHKNVASSVKKSAKSSACVKEENTQDLETPGIWGSRLRARSGNLRFSLEEERGLGRGKRKLFKEERVKDEENLVEVEMDGDKGDMEGGNSRVVKAGRRGKMKSMNSSWDRDKSEKSIEDEIEKEEMEDTGSESEEGLEDDTEKEDILGNTGSESEESIQDENEGGEMKVMGNNGEEVMENENEREDMVVMGNNGEDGIEDVNEREEIVLMGNNGKEAMDDEIEREEMVVSESKGQGSALISSSQMGVGNEREIVAGKLSRDIDKGDKEISGGLYPEGTGIDNDNVETVDNEELVECGQKEQEEVECAKEDVNQTNDEVPGEVSMKKEANGGTCVRKDVDVDKLHINSLEHENGLNMSSRLPSKQCIIEGRMCGLCGGGIDGKPPKIVQDMGESENETWCDASALEEPNYDIWDGFGEEPGWLGRLLGPINDRYGIAGIWVHQHCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGGPGATIGCRVDRCPRTYHLPCARAYGCIFDHRKFLIACTDHRHIFQPHGNQYLAQIKKMKAKKMKMEVRKVSNDAWRRDIEAEEKWLENCGEDEEFLKRESKRLHRDLLRIAPVYIGGSGSEGENLFQGWESVAGLQDVIRCMKEVVILPLLYPEFFDNLGITPPRGVLLHGYPGTGKTHFVRALIGACARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPQRTRQQDQTHSSVVSTLLALLDGLKSRGSVVVIGATNRPNAVDPALRRPGRFDREIYFPLPSMADRAAILSLHTRKWPKPVGGPLLKWIAKKTAGFAGADLQALCTQAAIISLKRNFPLHEVLSAAGVNGSLGKRPTLPAFAVEERDWLEAISCAPPPCSCREAGMAANGVVSSPLPSHLLPCLIKPLSTLLVSLYIDERIWLPTTLSNAAITIKSVIVSALDKKKMASNHWWSYVDNFIQEAEIAKEIEGKLSSTGILLGDTSTSDLGAINQDIDNKKFKPSIKHNDESGTCSIEHLSFASKNKSGFRILIAGGPRSGHRHLASCLLHCFVGNSEILKVDLASISQDGHGDVVQGIAQILMKCASVRSCIVFMPRIDLWAVETCRQVTDEEGDTFSTDDESPVKEESFVRPSQFSKKEDENSLEEAEFCASHAWCSFVEQVEYLCVSSSLMILATSEVPFPLLPERIRQFFRNDISICSQTILSEHTVPRFSVQIDGKFNRDIVINLSAAELSRDIVQLLVQLIHQKSHINPPLTCSNYRAYFIEGNTERVLCNGQEDVVKPPNEPSSPPNKGKSTLHLAISTFGYQILRYPHFAELCWVTSKLKEGPSADVSGPWKGWPFNSCITRPMNSLQKVSFNNGVSNVKAKEKSGIVRGLVAVGLSAYQGVYTSLREVSSEVRKVLELLVGQVDMKVNAGKDRYQYVRLLSQVAYLEDMVNNWAFTLQSLEHGASRIVLNPDKEHVCDDNGIQGKENNNDVSPNSSHLLETEEGCSKACTDDYEKVECVNLSKENGGHLGHYSSAPDVSTHYDAAAPTDQSVDNVSVERNGTIFGPYEVGNLQQANGIGPRDYVLISENGLSSGYKLSGDLNLSTKNNGSCSTETGTRSDDSSEPQTGDQNVDHTCSSSKTGVSTSSEGITCSFHCCSDCLSILHGWTKKILSNEFGSNRTVLTAEDVHDVVATLYLDLLAAVRQVLVTGDIRNLLDQNLRQGNSDSRACQCKNSKSMDFTPRECICHEQTKSTLSAEANTSLLNSKFIFRDGVLVSLEPEKGDPLHCRYENLCLCSLIELPGPTKWHTFSSN 1879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8588510 8596213 - Conep15aG0105700.1 Cone15ag1035 454163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1035 1879 MobiDBLite consensus disorder prediction 24 63 - -
Cone15ag1035 1879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 686 916 IPR027417 -
Cone15ag1035 1879 SMART AAA_5 720 861 IPR003593 GO:0016887(InterPro)
Cone15ag1035 1879 Gene3D - 686 859 IPR027417 -
Cone15ag1035 1879 MobiDBLite consensus disorder prediction 47 63 - -
Cone15ag1035 1879 MobiDBLite consensus disorder prediction 175 247 - -
Cone15ag1035 1879 Gene3D - 860 918 - -
Cone15ag1035 1879 MobiDBLite consensus disorder prediction 1191 1216 - -
Cone15ag1035 1879 PANTHER AAA DOMAIN-CONTAINING 42 1866 IPR045199 GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0016887(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Cone15ag1035 1879 FunFam ATPase family, AAA domain-containing 2 684 866 - -
Cone15ag1035 1879 MobiDBLite consensus disorder prediction 181 197 - -
Cone15ag1035 1879 MobiDBLite consensus disorder prediction 198 220 - -
Cone15ag1035 1879 FunFam P-loop containing nucleoside triphosphate hydrolases superfamily protein 445 600 - -
Cone15ag1035 1879 Pfam AAA+ lid domain 885 916 IPR041569 -
Cone15ag1035 1879 MobiDBLite consensus disorder prediction 1673 1713 - -
Cone15ag1035 1879 Pfam PHD-like zinc-binding domain 519 598 - -
Cone15ag1035 1879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 501 600 IPR013083 -
Cone15ag1035 1879 Pfam ATPase family associated with various cellular activities (AAA) 724 859 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone15ag1035 1879 MobiDBLite consensus disorder prediction 24 40 - -
Cone15ag1035 1879 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 860 952 - -
Cone15ag1035 1879 ProSitePatterns AAA-protein family signature. 829 847 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone15ag1035 1879 Coils Coil 375 395 - -
Cone15ag1035 1879 ProSiteProfiles Extended PHD (ePHD) domain profile. 478 598 IPR034732 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1035 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1035 Cone-Chr15:8588510 Cone18ag0880 Cone-Chr18:6205395 1.28E-74 dispersed
Cone14ag1047 Cone-Chr14:8819772 Cone15ag1035 Cone-Chr15:8588510 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g170 . . . . Bpe09g00245 . . Bma13g00940 Cmo16g00439 . . . . . . . . . . . . . . . Cla10g00660 Cam10g0656 Cec10g0680 Cco10g0652 Clacu10g0679 Cmu10g1503 Cre10g0883 . . Cone14ag1047 Cone15ag1035 . . . . . Blo10g00749 . Bda12g00871 . . . . . . . . Cma16g00407 . Car16g00371 Cpe14g00341 . . . . . . . . Cla05g00998 Cam05g1089 Cec05g1097 Cco05g1091 Clacu05g1083 Cmu05g1033 Cre05g1108 . . Chy06g01166 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002378 1 1 1 1 1 2 1 2 3 1 2 2 1 1 3 1 2 2 1 2 3 3 2 2 7 2 1 5 3 1 60