Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1048 ATGGAGGTGAACGATCCGACAACTCAGTTACTCGAAGCAGCTTCAGATTTTGCTTACTATCCCGGTCTTCAAAACGACGCTTCTGCCAAGAGCTTCCTCGCTCGCTTTCCTCTTCCTCTCATCATCAATGTTTTACAAACGCAAGGTGATGTCCCTGGACTGGAAACCACTTTAGTTGCATGTCTGGAAAGAGTTTTCAGAACTAAATATGGTGCTTCTCTCATTCCACAGTTTATGCCTTTTCTGCTAGTTGGGTTGAGGGCAGATTCACAAGCAGTCAGATGTTTAGCATGTAAAACAGTCGCTTGTCTTTTGGAGAGTTTTGATGACTCTGAAACTGCAGTTTCTGCTGCACGACTAATTGCTGAAAATGATATTTATCCTCTTTTACTTGATTGCCTTATCCATGGTGATGAACAAGTTTCAAATGCAGCAACGGATGCAATTAAGAGATTGGCCAGCTCTCCGAAAGGATTGGAAATTATCTTTCCCTCTATCAAAAATGAAGCGACACACCTTGGAAATTTGGCAAAAGAAAGTTCATCATTGGGTCGAGTCCGGATTATGTCCTTGGTAGTGAAGCTGTTTTCTGTATCTAGCTCTGTGGCATCAGCTGTATACAATTCAAATCTACTTGATTTATTCAAGGCAGAAATCAAAAGTACAAATGATACTCTTGCAACTTTAAGTGTCTTGGAGCTCTTTTACGAGCTGGTGGAGATTCAGCATGGCACGGAATTCTTGTCAAGTACCAGCTTTCTTCGACTTCTTTGTTCTATAATCAGAAATAAATCAGCGGATTCGATTTTAAGATCTAGAGCACTAATGATTGGTGGAAGGCTTCTTTCTAAGGAGGATACATACTCTTTCATTGATGAATCAGATGTTCATGCTGTTATATCAGCTATTGAAGAGACACTTGAGACATCAGAGAATCGAGATATTGAAGAATGTGAATCTGCTATTGAAGCATTGGGTCAAATAGGGACATCTACCCAAGGAGCCACCTTGATATTGACAAGTTCACCACCTGCTGCTAGACATGTTGAGTCGGCCTTCGATAAGCACAACCGTGGTAAACAGCTGGCTGCTCTTCATGCACTGGGAAACATCTCGGGAGAAACGAGATCGGAGAACAACAAAATATTGACCGAGGATGCCGAAGAAAGTCTTCGACAATTAATTTATCAAACTGCCTTGACAAGCTCAAAGCTGACCCCATCAGGCCTTTTTTTATCAGTTCTTCAACAAGATACCGAAATACGTTTAGCTGCTTACAGAATGATAACTGGCTTAGCTGCCCGGCCGTGGTGTGTGGTGGAGATTTGTTCAAAACCCGAAATAATTAATATAGTGACTGATGCAAGCACTGAAACCACAAAAATAGGTATGGAGTCGAGATATAATTGTTGTACGGCAATCCACAAAGCCCTTCTATCTTCAACTAGACTCTCTAGTGATCCAGCTCTTACTGCAATATCTGCGAAGCTACAGGAAAGTGTTAGAAATGGTCCGTATCTTTCCAGGAAGAATGTTGGAGCACAACCAACAGTAATGACAGCCGATAGATTCTAG 1575 41.65 MEVNDPTTQLLEAASDFAYYPGLQNDASAKSFLARFPLPLIINVLQTQGDVPGLETTLVACLERVFRTKYGASLIPQFMPFLLVGLRADSQAVRCLACKTVACLLESFDDSETAVSAARLIAENDIYPLLLDCLIHGDEQVSNAATDAIKRLASSPKGLEIIFPSIKNEATHLGNLAKESSSLGRVRIMSLVVKLFSVSSSVASAVYNSNLLDLFKAEIKSTNDTLATLSVLELFYELVEIQHGTEFLSSTSFLRLLCSIIRNKSADSILRSRALMIGGRLLSKEDTYSFIDESDVHAVISAIEETLETSENRDIEECESAIEALGQIGTSTQGATLILTSSPPAARHVESAFDKHNRGKQLAALHALGNISGETRSENNKILTEDAEESLRQLIYQTALTSSKLTPSGLFLSVLQQDTEIRLAAYRMITGLAARPWCVVEICSKPEIINIVTDASTETTKIGMESRYNCCTAIHKALLSSTRLSSDPALTAISAKLQESVRNGPYLSRKNVGAQPTVMTADRF 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8682534 8686683 + Conep15aG0107000.1 Cone15ag1048 454176

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1048 524 Gene3D - 246 502 IPR011989 -
Cone15ag1048 524 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 5-RELATED 6 524 IPR019538 GO:0005829(PANTHER)|GO:0043248(InterPro)
Cone15ag1048 524 SUPERFAMILY ARM repeat 49 483 IPR016024 -
Cone15ag1048 524 Gene3D - 22 244 IPR011989 -
Cone15ag1048 524 Pfam Proteasome non-ATPase 26S subunit 77 511 IPR019538 GO:0043248(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1048 K06692 - - vvi:100260719 676.396
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1055 Cone-Chr14:8906300 Cone15ag1048 Cone-Chr15:8682534 1.66E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g181 . . . Bda09g00526 . . . . . . Cma01g01224 . Car01g01046 . . . Cpe02g00690 Bhi09g03461 . . . Hepe01g1407 . . Cla11g01737 Cam11g1807 Cec11g1827 . Clacu11g1967 Cmu11g1777 Cre11g2183 . . Cone14ag1055 Cone15ag1048 Lsi04g02047 Csa04g02319 Chy07g00053 Cme07g00572 . . . . . . . . . Cmo01g01277 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010184 1 2 0 0 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 27