Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1054 ATGGAAGGATTAAACACTTCTCTTAGTCTTTTTCCATCCAATAGTTCTGGGTCTAGAAACGAAAGAGATAGTAGTATAAGAAATCGAGATGGTTTATCTGGAGGTTGCGAGGAACAAGAAGAAGAAGGAGAAGAACGATTAGGAATAGACCCTTTTGTTCCTTCTATAGAATGGGGGGATATTAGCTTAAGACAATGGTTGGATAAACCGGACAGATCTGTAGATTCCTTCGAATGTCTTCACATCTTTAAGCAAATACTGGAGATTGTAAATGTAGCTCATTCCCATGGAATTGTTGTTCACAATGTTAAACCTTCTTGCTTTGTCATGTCCTCTTTCAACCATGTCTCATTCATTGAATCTGCTTCTTGCTCGGATTCTGGCTCGGATTCCCCAGAAAATGGTTTAGATATCCGGTCAGGAGAGGGTAAAGGGGTAATTAGTACATCACCAAGTAGTGTTAGATTTCACCCATTTTCAGACCACCCAACAAATGCTTTATCGGAAACTAGTCGTATGCGCCCTAGTTCTTTCTATGTGGCCAGGGCTTCTTTGATTGAAGAGACTGAAGAGCATAGAATCAAAGGTAGAAGTATTGTTGTTGAAGAGAAGAAGCAGTCTTTTCCTATGAAACAAGTATTGGTGATGGAAACCAGTTGGTACACTAGTCCCGAAGAGTGGTCTGGTTCTCCCACTTGTGCTTCGGACGTGTATCAATTGGGTGTTCTTCTTTTTGAGTTATTCTGCCCCTTCAGCTCGAGAGAAGAAAAAAGTCGAACTATGTCTAGTCTTAGACATAGAGTTCTTCCTCCTCAATTGCTTTTGAAGTGGCCAAAAGAAGCTTCCTTTTGCTTATGGTTACTCCACCCTGAGCCCAGTTGTCGGCCCAAGCTGAGTGAGTTGTTACAGAGCGAATTCCTAAACGAGCCTAGAGACAATCTCAAAGAACGTGAAGCAGCAATAGAGCTCAAAGGAAGAATAGAGGAGCAAGAGTTATTGCTCGAATTCCTTTTACTCATACAACAAAGAAAACAAGAAGCTGCTCACAAGTTACAAGACACTGTTTCTTTCCTCTGTTCGGATATTGAAGAAGTCATGAAGCACCAAAACATCCTCCGGAGGAAGAGTTATTCGTGTCCCGAATTCGGAGAAGATGACCAGTCCACCTCAACTCCTACTCCTATGCCTTCCATGAATATCATAGAAAACAATGAGTCTGCTTTATTCGGGTCAAGGAAACGGTTTAGACCTGGAAGACCATTTAATGATGATAATAATACAAATGATGGTGAGAAATCAGACACAGTCACGGAAACTCAAGGAAGCACACTTCAAAATAATTCTCGTTTGATGGACAACTTCAAGAAGTTGGAGTCGGTTTATTTTATGATGAGATGTAGACAGATCAAGCCATCAAGGAAAGCATTAGCAAGACATTCATCTGTAAGTAGCGATGGTAGAGGGTCTATTGTTCTGACCGAAAGAAGTTCCGATAATAATAATAATAATATGGCATCAAAGGAGTGGTATGATGGAACTATACAAGGTGGTTGGATAAGTCCATTTCTTGAGGGTTTGTGCAAGTATCAATCTTTTAGCAAGTTAAGAGTTAAGGCGGATTTGAAGCAAGGGGATCTCTTAAATTCATCGAATCTCGTATGTTCCCTAGGTTTTGATCGGAATGGAGAGTTTTTCGCTACAGCCGGTGTCAATAGGAAGATTAAAGTATTTGAATGTGACTCAGTCATAAATGAAGACCAAGATATCCATTATCCGGTAGTTGAAATGGCTACTAGTTCGAAGCTCAGTAGTATTTGTTGGAATAGGTATATCAAAAGCCAAATTGCTTCGAGCAACTTTGAAGGTGCGGTCCAGGTATGGGACGTTGCTCGGAGTCAAACAATAATGGAAATGAGAGAACACGAGAGGCGAGTATGGTCCATTGATTTCTCCTCAGCGGACCCCACATTGCTAGCGAGCGGCAGTGATGACGGTTCCGTCAAGCTATGGAGTATCAATCAGGGAGTAAGTATTGGAACGATCAAAACAAAGGCCAATGTTTGTTGTGTCCAATTCCCATTTGATTCCGCTCGGTCCCTTGCATTTGGTTCAGCCGATCATAACATATATTACTATGATTTACGGAATTCAAAAATCCCTCTTGCCACGTTTATTGGACATAATAAGACGGTGAGTTATGTCAAGTTTGTGGATTCTAGAAGCCTTGTTTCTGCCTCCACGGATAACACTTTGAAGCTCTGGGATTTGTCGGTTTCCTCATCTCGGGTTGTTGATTCTCCATTACAATCATTTTCGGGCCATGTCAATGTAAAGAACTTTGTCGGTTTGTCTGTTTCTGATGGTTATATTGCTACTGGTTCGGAAACAAACGAGGTCTTCATCTACCATAAAGCTTTCCCAATGCCGGCATTATCATTCAAGTTTCAGACAGACACAAACTCCAGTTCCGGAATGGATGATGCTGCTCAGTTTGTTTCTTCGGTTTGTTGGCGGGCCCAGTCATCCATATTAGTAGCTGCGAATTCAACAGGCGATATCAAAATTCTTGAGATGGTTTAA 2580 41.36 MEGLNTSLSLFPSNSSGSRNERDSSIRNRDGLSGGCEEQEEEGEERLGIDPFVPSIEWGDISLRQWLDKPDRSVDSFECLHIFKQILEIVNVAHSHGIVVHNVKPSCFVMSSFNHVSFIESASCSDSGSDSPENGLDIRSGEGKGVISTSPSSVRFHPFSDHPTNALSETSRMRPSSFYVARASLIEETEEHRIKGRSIVVEEKKQSFPMKQVLVMETSWYTSPEEWSGSPTCASDVYQLGVLLFELFCPFSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPEPSCRPKLSELLQSEFLNEPRDNLKEREAAIELKGRIEEQELLLEFLLLIQQRKQEAAHKLQDTVSFLCSDIEEVMKHQNILRRKSYSCPEFGEDDQSTSTPTPMPSMNIIENNESALFGSRKRFRPGRPFNDDNNTNDGEKSDTVTETQGSTLQNNSRLMDNFKKLESVYFMMRCRQIKPSRKALARHSSVSSDGRGSIVLTERSSDNNNNNMASKEWYDGTIQGGWISPFLEGLCKYQSFSKLRVKADLKQGDLLNSSNLVCSLGFDRNGEFFATAGVNRKIKVFECDSVINEDQDIHYPVVEMATSSKLSSICWNRYIKSQIASSNFEGAVQVWDVARSQTIMEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANVCCVQFPFDSARSLAFGSADHNIYYYDLRNSKIPLATFIGHNKTVSYVKFVDSRSLVSASTDNTLKLWDLSVSSSRVVDSPLQSFSGHVNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFQTDTNSSSGMDDAAQFVSSVCWRAQSSILVAANSTGDIKILEMV 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8721448 8726865 - Conep15aG0107600.1 Cone15ag1054 454182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1054 859 MobiDBLite consensus disorder prediction 1 21 - -
Cone15ag1054 859 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 521 859 - -
Cone15ag1054 859 Pfam WD domain, G-beta repeat 720 755 IPR001680 GO:0005515(InterPro)
Cone15ag1054 859 Pfam WD domain, G-beta repeat 550 577 IPR001680 GO:0005515(InterPro)
Cone15ag1054 859 Pfam WD domain, G-beta repeat 635 671 IPR001680 GO:0005515(InterPro)
Cone15ag1054 859 MobiDBLite consensus disorder prediction 123 151 - -
Cone15ag1054 859 SMART serkin_6 1 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag1054 859 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 724 757 - -
Cone15ag1054 859 SMART WD40_4 631 671 IPR001680 GO:0005515(InterPro)
Cone15ag1054 859 SMART WD40_4 543 578 IPR001680 GO:0005515(InterPro)
Cone15ag1054 859 SMART WD40_4 592 628 IPR001680 GO:0005515(InterPro)
Cone15ag1054 859 SMART WD40_4 674 713 IPR001680 GO:0005515(InterPro)
Cone15ag1054 859 SMART WD40_4 717 755 IPR001680 GO:0005515(InterPro)
Cone15ag1054 859 SMART WD40_4 764 803 IPR001680 GO:0005515(InterPro)
Cone15ag1054 859 SMART WD40_4 808 857 IPR001680 GO:0005515(InterPro)
Cone15ag1054 859 SUPERFAMILY WD40 repeat-like 547 856 IPR036322 GO:0005515(InterPro)
Cone15ag1054 859 Gene3D - 524 859 IPR015943 GO:0005515(InterPro)
Cone15ag1054 859 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 638 675 - -
Cone15ag1054 859 MobiDBLite consensus disorder prediction 22 36 - -
Cone15ag1054 859 ProSiteProfiles Trp-Asp (WD) repeats profile. 724 764 IPR001680 GO:0005515(InterPro)
Cone15ag1054 859 MobiDBLite consensus disorder prediction 432 446 - -
Cone15ag1054 859 MobiDBLite consensus disorder prediction 412 446 - -
Cone15ag1054 859 ProSiteProfiles Trp-Asp (WD) repeats profile. 638 680 IPR001680 GO:0005515(InterPro)
Cone15ag1054 859 SUPERFAMILY Protein kinase-like (PK-like) 57 314 IPR011009 -
Cone15ag1054 859 MobiDBLite consensus disorder prediction 1 49 - -
Cone15ag1054 859 ProSitePatterns Trp-Asp (WD) repeats signature. 742 756 IPR019775 -
Cone15ag1054 859 PANTHER PROTEIN SPA1-RELATED 2 36 859 IPR044630 GO:0009640(InterPro)
Cone15ag1054 859 ProSiteProfiles Protein kinase domain profile. 1 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag1054 859 MobiDBLite consensus disorder prediction 416 431 - -
Cone15ag1054 859 Gene3D Transferase(Phosphotransferase) domain 1 60 318 - -
Cone15ag1054 859 PRINTS G protein beta WD-40 repeat signature 615 629 IPR020472 -
Cone15ag1054 859 PRINTS G protein beta WD-40 repeat signature 742 756 IPR020472 -
Cone15ag1054 859 PRINTS G protein beta WD-40 repeat signature 658 672 IPR020472 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1054 K26557 - - rcu:8273738 1146.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1397 Cone-Chr10:10869461 Cone15ag1054 Cone-Chr15:8721448 1.53E-106 dispersed
Cone12ag0261 Cone-Chr12:1376878 Cone15ag1054 Cone-Chr15:8721448 3.54E-168 dispersed
Cone15ag1054 Cone-Chr15:8721448 Cone8ag0255 Cone-Chr8:1460573 3.69E-154 dispersed
Cone14ag1062 Cone-Chr14:8950375 Cone15ag1054 Cone-Chr15:8721448 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g219 . . . . . . . . . . Cma01g01208 . Car01g01033 Car09g00778 Sed04g2397 . . Bhi09g03427 Tan01g4395 Cmetu07g0812 . Hepe01g1386 . . . . . . . . . . . Cone14ag1062 Cone15ag1054 . . . . . . . . . . . . . Cmo01g01262 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003437 3 3 1 2 3 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 2 4 45