Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1057 ATGCCTGCATCTTACTCTCCAACTCTTGCTTCGCCAAAATGGTGGCTGAATCTAACATGTATAATTCTTCTCACCACCATTTCTACTACCTCATCATCTCTTACATCTGAAACTCCACTCTCTTACACTACTACTTCACAGTGTTCGTCCTTCCTCCCTGGATCATCCCCAAAACACCGTAAGTCCAACAAATCCCCTCTTAAACAGCTGAACTCTGGTTATTTCGCTAATAGCGGAAATCATAATTTTGTCCACAGCGACAACTACTCTTTCAATTATTACTTACCCCCACATACTCTAAATTTCCTGTCTTTTCAACCCAAAATTGTCCATGAAACTCAAACCCAAGGCTTGTTCCAAGTCGAAGCGGGTCTTCGTCTTCAAGATGGCTCCGGCATGAACACTCTGAGATTTAGGCTGAGTGGGTTTTGGTCAGAAGCTTCTGGAAAGCTCTGTATGGTTGGATCAGGAAAAGGGAGTTCGACTAAAGGTAAATTACTTGAACTTGCTGTTGTTTTTAAACTCAACAATCTCAAGCATTCAAGTAATATCACTAGTTTGGTCTTCGGAACTTTAGAGAGCCTTAGTTCGGGTAAGAATGATTTAGGCAATTTTGAGGAAGTTCCTATCTTGTTGCTCCCCCAAATAAATTATAATTTCACTTTGGTCCCTGAAGAATCTGATAGTTACAGCCCTAGTCATCAATTTCCACAAGGTTTACCACTTTCTTCAATGCCTACAAAAAGTGTCTGCAATTTAGTCCAAAATGCAGATAACTTCTTTGCTATAAAGCCTCCATCCAAAATCATGGATTCAGATTTTCTTCCAAAATTCATCTATTTTAGCGACATTCAATGTTCTGAAGATGAAAAGAAGTTGAAACTCTCAGTAGAATTTTATAATGATAGTCATTATACTTATTACCGGTCTTTAAATCCGAAGAGGAGTTTGATTGGAGAAGGGTGGTGGGATGAGAAGAAGAACCGGCTCTCTATTATCAGTTTGGAATCATTCGATAAAGCCCATGTGGGTGATTGTTCGACCCGGTTGACTCTGACTTACCCGGCAACACGATCCATTAGAGATACTAGTAGCATTGTAGGGCAAATTTGGAGCCAAAAAGCATCTAATGAGACGGGCTATTTTGATCCAATTCGGTTTGATCACACTGATGATTCCAGAGCTGAGATTAATGATTTGGAGTACGAGTATACGGAAATCGAAAAGGCAAGGAAGTTGTGTCCTATGACGAAGAATGCAAAGGGATCAAGTGATTATCCGGATGTGAATTCTTATAACATGAGATTTGATATTTCGGTTAAAAATTCGAAAGGGAAGGTAATCACTTGGGGCTATGCCACTCCTCGGTTTGTAAATGATCAGGTTTTTGAGTTGAATTACTATTCATCTATTCTGTCTAATGCAAGCTTTGAAAATCCAGTTTCCATGAGAAAGTTGAATAGTACTAGAAGCTCGTTCAATATGAGCTACATGATAAGCATCTCAAGCATTTCACAAATGGGATCTAGTGATGGGATTTCTCCATTTTCTAACTCTTCTTCGAGTTTGAATGATATGATCCTAATTTCGGCAGAAGGGATTTATGATTCCGAAACAGGTAGCTTGTGCATGATCGGCTGTAGAGAAATCGGGTCCAAAAATCTAAAAACATCAGAAGGCGATTCAAAAGATTGTGAAATTCTTGTGAGCTTCCAATTTCCTCCTATAAATTCAAACAAGCAGGGAGGTTATATAAGTGGAAGCATTGAGAGCCAGAGGGAAAAAGGGAACCCACTTCACTTTGAACGGTTGGATTTGGTTTCAGCCGGTTTTGACATGAATGAAGCGAATCGTTCGATTTGGAGGATGAATATGGAGTTGGCTTTGGTTCTTATATCCACAACACTCGCTTGTGTTTTTGTGCTTTTCCAAATCTTTCATGCCCAAAAATATCCGAAAACACTTCCCTTAATCTCCCTTTTCATGCTATTAATCCTTACTCTAGGGCATATGATACCCCTTGTCCTAAACTTTGAAGCCTTGTTCATGTCCAAAACTGATCGTGCAGACTTTTATATTCACTCCAGCAAATGGGTGGAAGCTAATGAAGTCATTATAAGACTGGTAACAATGATTGCTTTCTTGTTACAATTTCGTCTCTTACAACTATCATTGTCCGCAAAAGCTGGGGTAGAGAATGGGAAAAGGCAAATGTGGGTTGTTGAGATGAAGGCCTTGTTCGTTTCTCTGTCCATATACGCAGCCGAGATTTTAGTTGCTTTGCTCGTGAAGTGGAAGAAGACTGATAATGAAGTTTTGATGATTTCCTCTTCTCCACTTTGGAGGGACTTGAATTCTTACGGCAGTATGGTATTGGATGGATTTCTTTTGCCTCAAATCATTCTAAACTTGTTTGAAAACTCGAAAGGGAAGTCTTTATCCTCTCTGTTTTACTTTGGAACAACCCTTGTTCGGCTTTTACCGCACGGATACGACCTTTACCGAGCTAATAGCTATAGTGCTAGACAGAACGGAAACATATATATCTATGCGGACCCATCCGAAGATTTTTATTCTTCTACGTGGGATGTGATCATTCTTCTTGGGGGTTTGTTCTTGGCTGTGGTTGTTTACTTGCAGCAACGTTTCGGTGCTCGTTTTATGCTTCCTCGGAGGTTCCGGGATTGCGGAATTTACGAAAGAGTCCCTATCTCTAGTGAAGCATAA 2727 40.01 MPASYSPTLASPKWWLNLTCIILLTTISTTSSSLTSETPLSYTTTSQCSSFLPGSSPKHRKSNKSPLKQLNSGYFANSGNHNFVHSDNYSFNYYLPPHTLNFLSFQPKIVHETQTQGLFQVEAGLRLQDGSGMNTLRFRLSGFWSEASGKLCMVGSGKGSSTKGKLLELAVVFKLNNLKHSSNITSLVFGTLESLSSGKNDLGNFEEVPILLLPQINYNFTLVPEESDSYSPSHQFPQGLPLSSMPTKSVCNLVQNADNFFAIKPPSKIMDSDFLPKFIYFSDIQCSEDEKKLKLSVEFYNDSHYTYYRSLNPKRSLIGEGWWDEKKNRLSIISLESFDKAHVGDCSTRLTLTYPATRSIRDTSSIVGQIWSQKASNETGYFDPIRFDHTDDSRAEINDLEYEYTEIEKARKLCPMTKNAKGSSDYPDVNSYNMRFDISVKNSKGKVITWGYATPRFVNDQVFELNYYSSILSNASFENPVSMRKLNSTRSSFNMSYMISISSISQMGSSDGISPFSNSSSSLNDMILISAEGIYDSETGSLCMIGCREIGSKNLKTSEGDSKDCEILVSFQFPPINSNKQGGYISGSIESQREKGNPLHFERLDLVSAGFDMNEANRSIWRMNMELALVLISTTLACVFVLFQIFHAQKYPKTLPLISLFMLLILTLGHMIPLVLNFEALFMSKTDRADFYIHSSKWVEANEVIIRLVTMIAFLLQFRLLQLSLSAKAGVENGKRQMWVVEMKALFVSLSIYAAEILVALLVKWKKTDNEVLMISSSPLWRDLNSYGSMVLDGFLLPQIILNLFENSKGKSLSSLFYFGTTLVRLLPHGYDLYRANSYSARQNGNIYIYADPSEDFYSSTWDVIILLGGLFLAVVVYLQQRFGARFMLPRRFRDCGIYERVPISSEA 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8761227 8763974 - Conep15aG0107900.1 Cone15ag1057 454185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1057 908 Pfam Protein of unknown function (DUF2921) 46 888 IPR021319 -
Cone15ag1057 908 PANTHER FAMILY PROTEIN, PUTATIVE (DUF2921)-RELATED 20 906 IPR021319 GO:0043231(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1057 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1057 Cone-Chr15:8761227 Cone9ag1014 Cone-Chr9:5325858 1.46E-171 dispersed
Cone14ag1068 Cone-Chr14:8986828 Cone15ag1057 Cone-Chr15:8761227 0 wgd
Cone15ag1057 Cone-Chr15:8761227 Cone6ag1017 Cone-Chr6:5688386 9.95E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g230 . Blo03g01545 . Bda09g00504 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1068 Cone15ag1057 . . . . . . . . . . Bma07g01177 Bma14g00237 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003666 2 1 2 3 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 3 1 1 1 1 1 1 1 3 45