Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1059 ATGGCTACAGTGCTCGAAACTCTCGCCGTTCCTCGCTGTTCTGCCACCATGGGCTCCCCTACTGTCCCCCCCATCTCCGCCTCCTCCGTTTCTTCGTTATCCGGTCCTCGGAGCTCAGTTTCCGTCCCGAAGTTCAGAGGCCTCAAGATCTCCACCTCCGTCTCTACCGGATCGGTTAGGTCCAATCCCAGACTCGCTCGCCGAGGTTCTAGGATCGTTTGCGAGGCTCAGGATACTGCTGTTGCAGTGCCTGGTGTTACCGACGCTAACTGGCAATCAGTAGTCCTGGAATCCGATCTCCCCGTTCTAGTCGAATTCTGGGCCCCATGGTGTGGACCCTGCCGTATGATCCATCCAATCATAGACGAATTGTCAAAGGAATATACCGGAAAGTTCAAATTCTTCAAGGTTAATACTGACGAGAGCCCTTCCATTGCAACCCAATACGGAATCCGAAGCATTCCCACCGTTATCATCTTCAAGAATGGCGAAAAGAAAGATGCAGTTATTGGTGCCGTTCCAAAATCCACATTGACCACAAGTATCGAGAAACTCTTATAA 561 51.34 MATVLETLAVPRCSATMGSPTVPPISASSVSSLSGPRSSVSVPKFRGLKISTSVSTGSVRSNPRLARRGSRIVCEAQDTAVAVPGVTDANWQSVVLESDLPVLVEFWAPWCGPCRMIHPIIDELSKEYTGKFKFFKVNTDESPSIATQYGIRSIPTVIIFKNGEKKDAVIGAVPKSTLTTSIEKLL 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8773164 8775049 + Conep15aG0108100.1 Cone15ag1059 454187

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1059 186 NCBIfam thioredoxin 87 184 IPR005746 GO:0015035(InterPro)
Cone15ag1059 186 Pfam Thioredoxin 86 183 IPR013766 -
Cone15ag1059 186 CDD TRX_family 89 183 - -
Cone15ag1059 186 MobiDBLite consensus disorder prediction 21 40 - -
Cone15ag1059 186 SUPERFAMILY Thioredoxin-like 81 186 IPR036249 -
Cone15ag1059 186 FunFam Thioredoxin 77 186 - -
Cone15ag1059 186 ProSitePatterns Thioredoxin family active site. 103 121 IPR017937 -
Cone15ag1059 186 ProSiteProfiles Thioredoxin domain profile. 74 186 IPR013766 -
Cone15ag1059 186 Gene3D Glutaredoxin 83 186 - -
Cone15ag1059 186 PANTHER GEO12009P1 53 186 - GO:0005737(PANTHER)|GO:0015035(PANTHER)
Cone15ag1059 186 PRINTS Thioredoxin family signature 110 119 - -
Cone15ag1059 186 PRINTS Thioredoxin family signature 102 110 - -
Cone15ag1059 186 PRINTS Thioredoxin family signature 150 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1059 K03671 - - vvi:100245250 237.269
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1059 Cone-Chr15:8773164 Cone17ag0803 Cone-Chr17:6354776 6.24E-54 dispersed
Cone20ag0373 Cone-Chr20:1720265 Cone15ag1059 Cone-Chr15:8773164 1.37E-22 transposed
Cone12ag1457 Cone-Chr12:10473132 Cone15ag1059 Cone-Chr15:8773164 5.65E-60 wgd
Cone14ag1070 Cone-Chr14:8994984 Cone15ag1059 Cone-Chr15:8773164 2.87E-111 wgd
Cone15ag1059 Cone-Chr15:8773164 Cone8ag1505 Cone-Chr8:11392596 8.19E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g240 . . . . . . Bma10g00502 . Cmo16g00845 Cmo04g00973 . . . . . . . . . . . . . . Cla10g00647 Cam10g0643 Cec10g0664 Cco10g0639 Clacu10g0666 Cmu10g1493 Cre10g0874 . . Cone14ag1070 Cone15ag1059 . Csa03g00627 . . . . . Bda12g00865 . Bpe03g00834 . . . . . Cma04g00906 Cma16g00782 Car04g00849 . Cpe14g00681 . . . . . . . . . . . . . . . Lsi05g00715 . Chy06g01700 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004200 2 2 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 43