Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1061 ATGCGAGTGATACTTTCTAGTAATGTTTTTCTTTGGCATTTTCTTTCCTTTGTTTGCTTGGTTTCCAAGGGAATAAGGGGTCGGGTTACTGGTAATTGGCTCGATGCTCATGCAACGTTCTATGGAGCCAACCAAAACCCTACTAGTCTTGGAGGAGCATGTGGGTATGATAACACGATCCATGCCGGGTTCGGAGTGGACACGGTGGCCGTGAGCGGTGTTTTATTCAAAGGAGGACAGGCTTGTGGGGCTTGCTTCCAAGTGACTTGCAACTACAGGCTTGATCCGAAGTGGTGTTTGCGCGGTAGATCCGTGACTGTAACTACCACCAACTTTTGCCCTGCAAACAACAACGGCGGATGGTGTGATCCCCCTCGGCCCCACTTTGATATGTCGTCGCCTGCTTTTTTTCGGATTGCACGACGAGGCGACGAGGGCATAATTCCGGTACTCTTTATGAGGGTACCATGCAAGAGGAGAGGAGGGGTGCGTTTCACGTTGAAGGGACAATTAAACTTCAACATGGTGATGATATCAAACGTTGGAGGAAGTGGAGATGTGAAGGGTGTCTGGATAAGAGGATCTAGGGCAAGAAAATGGGCATCAATGCATAGAAATTGGGGTGCAAATTGGCAAAGCTCTATTGATTTTAGAAATCAAAGACTTTCTTTCAAACTCACTTTGATTGATGGCAAGACATTAGAATTTCTCAATGTTGTTCCTTCTACTTGGAGGTTCGGACAGACATTTTCTACCTTAAGACAGTTTTATTAG 774 45.99 MRVILSSNVFLWHFLSFVCLVSKGIRGRVTGNWLDAHATFYGANQNPTSLGGACGYDNTIHAGFGVDTVAVSGVLFKGGQACGACFQVTCNYRLDPKWCLRGRSVTVTTTNFCPANNNGGWCDPPRPHFDMSSPAFFRIARRGDEGIIPVLFMRVPCKRRGGVRFTLKGQLNFNMVMISNVGGSGDVKGVWIRGSRARKWASMHRNWGANWQSSIDFRNQRLSFKLTLIDGKTLEFLNVVPSTWRFGQTFSTLRQFY 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8779097 8780403 + Conep15aG0108300.1 Cone15ag1061 454189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1061 257 PRINTS Expansin signature 173 194 IPR002963 GO:0009664(InterPro)
Cone15ag1061 257 PRINTS Expansin signature 119 136 IPR002963 GO:0009664(InterPro)
Cone15ag1061 257 PRINTS Expansin signature 63 77 IPR002963 GO:0009664(InterPro)
Cone15ag1061 257 PRINTS Expansin signature 92 103 IPR002963 GO:0009664(InterPro)
Cone15ag1061 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664(InterPro)
Cone15ag1061 257 PRINTS Expansin signature 105 115 IPR002963 GO:0009664(InterPro)
Cone15ag1061 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664(InterPro)
Cone15ag1061 257 PRINTS Expansin signature 161 173 IPR002963 GO:0009664(InterPro)
Cone15ag1061 257 Pfam Expansin C-terminal domain 163 241 IPR007117 -
Cone15ag1061 257 SUPERFAMILY Barwin-like endoglucanases 14 180 IPR036908 -
Cone15ag1061 257 Gene3D - 22 158 IPR036908 -
Cone15ag1061 257 CDD DPBB_EXPA_N 33 157 - -
Cone15ag1061 257 Gene3D - 163 257 IPR036749 -
Cone15ag1061 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
Cone15ag1061 257 SMART dpbb_1 68 152 IPR007112 -
Cone15ag1061 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 162 IPR007112 -
Cone15ag1061 257 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Cone15ag1061 257 Pfam Lytic transglycolase 69 151 IPR009009 -
Cone15ag1061 257 PANTHER EXPANSIN-A15 17 251 IPR002963 GO:0009664(InterPro)
Cone15ag1061 257 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576(InterPro)
Cone15ag1061 257 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576(InterPro)
Cone15ag1061 257 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576(InterPro)
Cone15ag1061 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576(InterPro)
Cone15ag1061 257 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576(InterPro)
Cone15ag1061 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1061 Cone-Chr15:8779097 Cone1ag0781 Cone-Chr1:53837989 5.63E-86 dispersed
Cone12ag1452 Cone-Chr12:10458242 Cone15ag1061 Cone-Chr15:8779097 3.70E-38 wgd
Cone15ag1061 Cone-Chr15:8779097 Cone8ag1502 Cone-Chr8:11379574 6.75E-35 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1061 - - - 0.0