Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1062 ATGGCGTTATCAACAAACAAAATAATAAACAGAGCTTCTTCCTTTTTCAATCTCGCGAGAAACTCATACAGCACAAGAAGGGGTTGTAATCGAAGAAATCTCTTCGCGAGAATCAGTCCTCTAGGCGACCCTGATCTCAGCGTAATCCCTGTTCTTGATGAGTGGGTTCGAGAAGGAAGAACGATCAACGAATTCGATCTGAAGAGAATCATTCGTGACCTTCGTTCTAGCAAGCGGTTCGGTCATGCGCTTGAGGTTTCAGAGTGGATGAGAAGGAAAGGACCCTTTCCATTTTCACCTGGAGATCAAGCTGTACAGCTAGACCTAATCGGCCGAGTCCATGGACTCAATTCAGCAGAGACATACTTCAATAGCTTAACTGATCCTGAAAAAGTCGATAAGCTATATGGTGCTCTTCTAAACTGTTATGTAAGAGAGGGCCTTGTAGAAAAATCCCTTTCTCTTATGCAGACTATGAAAGAGATGGGTTTTGCTTCTTCTCCTATTAACTACAATGATATCATGACCCTACACTTGCGTTCGGGCCAATTAGAGAAAATTCCCGAGTTGTTATCAGAAATGAAGGACAAAGGGGTTTACCCGGATAACGTTAGTTATAGAATTTGTATAAACTCATATGGAGCTGGATTGGATATAGAGGGTATGGAGAAAGTTCTAGAAGAAATGGAGAATCAAACAAATATTTCTATGGATTGGACTACTTATTCCATGGTGGCAAATTTCTATATAAAAGCTGGAAATCGTGAGAAAGCATTGATGTATTTATGGAAATGTGAAGGTAAAGTGGATAAAGAAGCCATTGGTTATAATCATCTCATTTCGCATTATGCGAATCTTGGGAACAAATTCGAGATGATGAGATTGTGGGGCCTACTCAAATCAAATTGCAAGAAGCAATTGAACCGGGATTACATAACCATTTTGGGCTGTTTAGTGAAAATTGGCGAGCTTGAAGAAGCTGAAGTTTTGCTTAAAGAATGGGAATCAGCTTGTAAGGCTTATGATTTTCGGGTTCCAAATATTCTTCTTATAGGGTATTCTCAGAAGGGTTTGATCGAAAAAGCCGAAAAGAGGCTTATGGATATGATTAATGAAGGAAAGAGTCCTACGCCGAATAGTTGGGCTATTATTGCAAAAGGGTATGTGGATAAGATGGATATGGAGAAGGGTTTTGAGTGTATGGAAGAAGCTCTTGTTGTGCAAGCTCGAAATAAATATTGGAGGCCTAAATGGAAAATTATAGGAAGTATTGTCATCTGGTTGGTCAAAAATGGGAAGAATGAAGAATTTAAACAGTTTTTGAGCTTATTGAAGACGGTTCCTACTTTGGATAGGAGGGTGTTGGATGCATTAGATCAAGCATATATAGAAGGCGGGAAAGAAACTGATGAGATGATAGAAATCCTTAAATGCGAACATAATGTCAAAAATGATGATGTTTTAGATGAAAATCAATCCGTAGGAGATTGTGTGGTGTAA 1500 39.07 MALSTNKIINRASSFFNLARNSYSTRRGCNRRNLFARISPLGDPDLSVIPVLDEWVREGRTINEFDLKRIIRDLRSSKRFGHALEVSEWMRRKGPFPFSPGDQAVQLDLIGRVHGLNSAETYFNSLTDPEKVDKLYGALLNCYVREGLVEKSLSLMQTMKEMGFASSPINYNDIMTLHLRSGQLEKIPELLSEMKDKGVYPDNVSYRICINSYGAGLDIEGMEKVLEEMENQTNISMDWTTYSMVANFYIKAGNREKALMYLWKCEGKVDKEAIGYNHLISHYANLGNKFEMMRLWGLLKSNCKKQLNRDYITILGCLVKIGELEEAEVLLKEWESACKAYDFRVPNILLIGYSQKGLIEKAEKRLMDMINEGKSPTPNSWAIIAKGYVDKMDMEKGFECMEEALVVQARNKYWRPKWKIIGSIVIWLVKNGKNEEFKQFLSLLKTVPTLDRRVLDALDQAYIEGGKETDEMIEILKCEHNVKNDDVLDENQSVGDCVV 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8785477 8787983 + Conep15aG0108500.1 Cone15ag1062 454190

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1062 499 Pfam PPR repeat 347 373 IPR002885 -
Cone15ag1062 499 Pfam PPR repeat 136 164 IPR002885 -
Cone15ag1062 499 Pfam PPR repeat 311 336 IPR002885 -
Cone15ag1062 499 NCBIfam pentatricopeptide repeat 135 164 IPR002885 -
Cone15ag1062 499 NCBIfam pentatricopeptide repeat 171 202 IPR002885 -
Cone15ag1062 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Cone15ag1062 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Cone15ag1062 499 Gene3D Tetratricopeptide repeat domain 218 304 IPR011990 GO:0005515(InterPro)
Cone15ag1062 499 Gene3D Tetratricopeptide repeat domain 47 217 IPR011990 GO:0005515(InterPro)
Cone15ag1062 499 PANTHER OS12G0527900 PROTEIN 9 485 - GO:0005739(PANTHER)
Cone15ag1062 499 Pfam PPR repeat family 170 213 IPR002885 -
Cone15ag1062 499 Gene3D Tetratricopeptide repeat domain 308 492 IPR011990 GO:0005515(InterPro)
Cone15ag1062 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 132 166 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1062 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1062 Cone-Chr15:8785477 Cone6ag1019 Cone-Chr6:5699814 7.81E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g243 Blo03g00650 . Bda07g00292 . . . . . . Cmo04g00975 . . . . . . . . . . . . . . Cla10g00644 Cam10g0640 Cec10g0662 Cco10g0637 Clacu10g0663 Cmu10g1490 Cre10g0872 . . . Cone15ag1062 . Csa03g00624 . . . . . . . Bpe01g00425 . Bma14g00231 . . . Cma04g00908 . Car04g00851 . . . . . . . . . . . . . . . . . Lsi05g00713 . Chy06g01702 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002224 2 4 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 62