Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1064 ATGACTACCTTCCGAAAGCTTTTGCTCAATGGAAATCCTTTGAGAACTCTTCGAAGCTCACTGGTTTCTGGACCCACACCTGCTCTGTTGAGGCATCTTCGAAGTAGACTTGCTGAGGGTGAGGATCCTGAAGTTACTACACCATCAAAAGATAACGTTATTGCTATGGTAGCTCGAATGTCCTTGACTTCAAAGGAACTTTCTCTAGTATGGCTTCCGTTGAGTGCTGTCCCATCGGAAGCATGGGAATCAAGAGAGACTACAAAGCTTGATCTTTCTAGAAACTCCATCCACAAGCTGTTGCCTGTTGATAGTATCGTTTCATGTAATCAGTTTAGTTTTATTCCCTTGGATGGATTTCAAGCACTCTCTACGCTACAAGTTCTTGACCTAAGTGTGAATTCAGCTTCATTGCCAAATCACCCCCCGTTTTCAAGCTTACCCAATTTGCAAGACCTGTATTTAAGGCAAGTCAAGCTCCAAGAAATCCCATCAAGTATATTAAGCTTACAGAAAATCCGGATTCTTGACTTAAGCCAAAATTCACTTCAATCGGTTCCAGAGTATACGGAGGGCGATTCTAGAGAGAATTACAGACCAATAGCTTGTCCATCTACCATGCCCCACCATGTTTGTATTCTTGCAGATGATATGGAGGCCAATTCGATGAACCAGGAGCCCAACAGAGAAGACGACGAAGATGAATATGTATTGCTTGATCTTGACAATATATCCGGACAACTTGACATCCCACCAAATGCACCCTACGTTCTCTCGGGTCTAGACACCTTAAATCCAGTTTTGACAATAGGCAACAAGTTGAAGCTGATTGGAGACTATCAAGAAACAATAGGCACTTGTATTGTTTTCAAAGAAGAGGTTGCTCCTATGGTTCATGAAGAGACAGGCCCCTCTGAAGCAAATATTTTCAAGGGAAAATGCATAATAGACCCGAACCAAGCTCCGAGAAAACAGGTACAACCGATCGCCTGCTTGCAAAAGGTTCTAAAGTTTAGATTGCTGCAAAATGCCGATACTAAGGATTCTGCTCCTACGCATACTGTATCTAAAACTTAA 1077 42.43 MTTFRKLLLNGNPLRTLRSSLVSGPTPALLRHLRSRLAEGEDPEVTTPSKDNVIAMVARMSLTSKELSLVWLPLSAVPSEAWESRETTKLDLSRNSIHKLLPVDSIVSCNQFSFIPLDGFQALSTLQVLDLSVNSASLPNHPPFSSLPNLQDLYLRQVKLQEIPSSILSLQKIRILDLSQNSLQSVPEYTEGDSRENYRPIACPSTMPHHVCILADDMEANSMNQEPNREDDEDEYVLLDLDNISGQLDIPPNAPYVLSGLDTLNPVLTIGNKLKLIGDYQETIGTCIVFKEEVAPMVHEETGPSEANIFKGKCIIDPNQAPRKQVQPIACLQKVLKFRLLQNADTKDSAPTHTVSKT 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8796099 8800619 + Conep15aG0108700.1 Cone15ag1064 454192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1064 358 SMART LRR_typ_2 170 193 IPR003591 -
Cone15ag1064 358 SMART LRR_typ_2 147 169 IPR003591 -
Cone15ag1064 358 SMART LRR_typ_2 1 24 IPR003591 -
Cone15ag1064 358 Gene3D Ribonuclease Inhibitor 45 225 IPR032675 -
Cone15ag1064 358 Gene3D - 226 336 - -
Cone15ag1064 358 Pfam TFIIIC subunit triple barrel domain 231 340 IPR019481 -
Cone15ag1064 358 PANTHER TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 6-RELATED 223 352 IPR042771 GO:0000127(PANTHER)|GO:0006383(InterPro)|GO:0006383(PANTHER)
Cone15ag1064 358 FunFam Transcription factor TFIIIC, tau55-related protein 223 348 - -
Cone15ag1064 358 SUPERFAMILY L domain-like 68 189 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1064 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1071 Cone-Chr14:8997902 Cone15ag1064 Cone-Chr15:8796099 3.38E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g248 . . . . . . . . Cmo16g00848 . . . . . . . . . . . . . . . Cla10g00639 Cam10g0637 Cec10g0657 Cco10g0633 Clacu10g0660 Cmu10g1485 Cre10g0867 . . Cone14ag1071 Cone15ag1064 . Csa03g00619 . . . . . . . . . . . . . . Cma16g00786 . . Cpe14g00684 . . . . . . . . . . . . . . . Lsi05g00710 . Chy06g01706 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012850 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 0 0 1 1 1 3 1 1 26