Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1068 ATGTGGAATAAAGTCAAGGAAGTGAGTACAGGAAGGCAGTTGACCATGGAGGAGTTTGAGATGTGTGTGGGCCATTCCCCTATCGTTCAAGAATTGATGAGGAGACAAAATGTAGAAGATGGTAACAACAATAAGGTTAATTTGGACTCAAGTGCAAAATTTTGTAGTGGAGGGGGTCAAAATGTGAAATCGAAAAAGAAACTGGGCGGGTGGTTTCAGAGTATAAAGAACACCGTGATTACTAAAGAGAGACGGAGTAGTGATGAGAGAGGAGATGCCTCCTCAGAGAAAGGTGGGGCCCGGTGGAGCTCGGCTACGGATGATAGTCAGGATGTTTCGGTTAATGAGCTGGAGCCGGAAAGGGTCCGGGTTAGGCAGTTTGGTAAGTCATCAAAAGACCTAACTGCCCTTTATAAGAGTCAAGAGATAAAGGCTCATTCTGGATCGATTTGGAGTATTAAGTTTAGCTTGGACGGGAAGTATCTTGCTAGTGCAGGTGAAGATCGGGTTATTCATGTTTGGAAAGTTGTGGAATTGGATAAAACCGAACAAGGGAATTTGAATCTTCTTGTTTTAGCTAATGGTTCGTCTGAAATGACGTCATTATTTCCTAATATGGATTATAACTATGTGGAGAAAAAGAGAAGGGGGGGGTCTTCTATTAGCCGCAAATCGTTGAGTTTGGACGAAGTTTCTGTGCCGGAAACTGTCTTTGGGCTTTCGGAAAAACCTGCTTTTTCGTTTGAGGGTCATTTTGATGATGTCCTTGACCTCTCATGGTCCCAGTCTCAGCAGTTGCTCTCATCTTCAATGGACAAAACCGTGCGATTATGGGACTTGTCTAGCAAATCTTGTCTCAAAATTTTTTCACACAGTGATTATGTAACTTGCATCCAGTTTAATCCAATTGATGATAGATACTTCATAAGTGGGTCCCTTGATGCTAAAGTACGTATATGGAGTATCCCAGATCGTCAGGTTGTTGATTGGAGTGATCTCCATGAGATGGTTACTTCAGCTTGCTATACTCCAGATGGCCAGGGCGCATTGGTCGGTTCATACAAGGGAAGCTGCCTTTTATACAATACCTCAGAGAATAAATTGCAACAGAAAGGTCGAGTGAATCTTCAGAATAAGAAGAAGAAATCTCATTACAAGAAGATCAATGGTTTCCAATTTTCTCCAGGAAGTTCATCTGAGGTATTAATCACATCAGCAGATTCAAGAATCAGAGTTGTTGACGGTCTTGATCTGGTTCACAAATTCAAAGGGTTCCGTAACATGAATAGCCAAATCTCGGCCCACCTCACGGCAAACGGTAAATACGTGGTCTGTGCCAGCGAGGACTCTCACGTTTACATATGGAAATACGAGCTTGATTCTCGGCACAACAGAAATAAAAGCATCACGACCACACGCTCGTATGAGCATTTCCACTGTCAAGATGTCTCCTTAGCAATCCCATGGCCTGGTTTTTCTGGTCATAATGCCAAGGCGGGACTCATTGATGAAATCTCCACCACCACTTACCATCCTCCAACACCCATTGAGGAGGAAGAGGCAGTGGGCCTGCCACAATCAGCCCATGGGCCCATTGGCCCGCATCGTGGAATCATATCTAGCGCAACGAACAGTTACTTCTTTGATAGAATCTCAGCTACATGGCCAGAGGAGAAACTTGTCCTGCCTCCTCGTGTTAGTGCGGATGATCAGAGCATGCCTGCTTGGGGTATGGTGATTGTAACGGCCGGTTTGAGAGGTGAGATTCGAACTTTTCAAAACTTTGGGTTACCGGTTCGACTTTAA 1806 44.24 MWNKVKEVSTGRQLTMEEFEMCVGHSPIVQELMRRQNVEDGNNNKVNLDSSAKFCSGGGQNVKSKKKLGGWFQSIKNTVITKERRSSDERGDASSEKGGARWSSATDDSQDVSVNELEPERVRVRQFGKSSKDLTALYKSQEIKAHSGSIWSIKFSLDGKYLASAGEDRVIHVWKVVELDKTEQGNLNLLVLANGSSEMTSLFPNMDYNYVEKKRRGGSSISRKSLSLDEVSVPETVFGLSEKPAFSFEGHFDDVLDLSWSQSQQLLSSSMDKTVRLWDLSSKSCLKIFSHSDYVTCIQFNPIDDRYFISGSLDAKVRIWSIPDRQVVDWSDLHEMVTSACYTPDGQGALVGSYKGSCLLYNTSENKLQQKGRVNLQNKKKKSHYKKINGFQFSPGSSSEVLITSADSRIRVVDGLDLVHKFKGFRNMNSQISAHLTANGKYVVCASEDSHVYIWKYELDSRHNRNKSITTTRSYEHFHCQDVSLAIPWPGFSGHNAKAGLIDEISTTTYHPPTPIEEEEAVGLPQSAHGPIGPHRGIISSATNSYFFDRISATWPEEKLVLPPRVSADDQSMPAWGMVIVTAGLRGEIRTFQNFGLPVRL 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8821622 8825337 - Conep15aG0109100.1 Cone15ag1068 454196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1068 601 PRINTS G protein beta WD-40 repeat signature 162 176 IPR020472 -
Cone15ag1068 601 PRINTS G protein beta WD-40 repeat signature 308 322 IPR020472 -
Cone15ag1068 601 PRINTS G protein beta WD-40 repeat signature 266 280 IPR020472 -
Cone15ag1068 601 SMART WD40_4 415 456 IPR001680 GO:0005515(InterPro)
Cone15ag1068 601 SMART WD40_4 282 321 IPR001680 GO:0005515(InterPro)
Cone15ag1068 601 SMART WD40_4 375 414 IPR001680 GO:0005515(InterPro)
Cone15ag1068 601 SMART WD40_4 136 175 IPR001680 GO:0005515(InterPro)
Cone15ag1068 601 SMART WD40_4 241 279 IPR001680 GO:0005515(InterPro)
Cone15ag1068 601 SMART WD40_4 324 362 IPR001680 GO:0005515(InterPro)
Cone15ag1068 601 FunFam WD repeat-containing protein 44 229 495 - -
Cone15ag1068 601 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 176 - -
Cone15ag1068 601 MobiDBLite consensus disorder prediction 82 96 - -
Cone15ag1068 601 Pfam WD domain, G-beta repeat 141 174 IPR001680 GO:0005515(InterPro)
Cone15ag1068 601 Pfam WD domain, G-beta repeat 284 321 IPR001680 GO:0005515(InterPro)
Cone15ag1068 601 Pfam WD domain, G-beta repeat 433 455 IPR001680 GO:0005515(InterPro)
Cone15ag1068 601 Pfam WD domain, G-beta repeat 243 279 IPR001680 GO:0005515(InterPro)
Cone15ag1068 601 Gene3D - 121 218 IPR015943 GO:0005515(InterPro)
Cone15ag1068 601 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 248 282 - -
Cone15ag1068 601 Gene3D - 225 484 IPR015943 GO:0005515(InterPro)
Cone15ag1068 601 ProSiteProfiles Trp-Asp (WD) repeats profile. 288 322 IPR001680 GO:0005515(InterPro)
Cone15ag1068 601 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 288 IPR001680 GO:0005515(InterPro)
Cone15ag1068 601 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 176 IPR001680 GO:0005515(InterPro)
Cone15ag1068 601 SUPERFAMILY WD40 repeat-like 138 458 IPR036322 GO:0005515(InterPro)
Cone15ag1068 601 ProSitePatterns Trp-Asp (WD) repeats signature. 266 280 IPR019775 -
Cone15ag1068 601 PANTHER WD REPEAT DOMAIN 44 2 601 IPR040324 -
Cone15ag1068 601 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 288 322 - -
Cone15ag1068 601 MobiDBLite consensus disorder prediction 82 117 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1068 K20241 - - mdm:103413286 816.224
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1068 Cone-Chr15:8821622 Cone3ag0335 Cone-Chr3:1701167 6.53E-150 dispersed
Cone14ag1075 Cone-Chr14:9015738 Cone15ag1068 Cone-Chr15:8821622 0 wgd
Cone15ag1068 Cone-Chr15:8821622 Cone6ag0130 Cone-Chr6:637844 1.72E-283 wgd
Cone15ag1068 Cone-Chr15:8821622 Cone9ag0154 Cone-Chr9:685015 6.88E-278 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g261 . . Bda07g00286 . . . . . . . Cma01g01196 Cma09g00880 Car01g01021 . Sed14g0480 Cpe06g00704 Cpe02g00713 Bhi09g03394 Tan01g4420 Cmetu08g0046 . Hepe01g1370 Mch11g1089 . Cla11g01778 Cam11g1842 Cec11g1863 Cco11g1873 Clacu11g2004 Cmu11g1813 Cre11g2221 Cone6ag0130 Cone9ag0154 Cone14ag1075 Cone15ag1068 Lsi04g01318 Csa04g02363 Chy07g00092 . . . . . Bpe11g00491 . . . . Cmo01g01250 Cmo09g00870 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030059 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2