Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1072 ATGGCGTTCCCTTTATCCTCTGCCCATCTCTCACTTCTTAAGCCCTCTCTCAATCTCTACCACATTTCTACCTCTGGAACTCGAACTTTCCTCCCTTCCCACTTCACATTTCCCTCCCACCAAATGCCCACTTACCATGTCTCCACAACGTCAGCACGCTCTGCTTCTTCTTCTGTCGAATCCAGATTCTTCTGCTCCGTCTCTGCTAAAAATCCATCGATGGAATCAGAAGGTGAAAATAACGTCTTGACAAACTTAAGCACATCTTCGTGCTTTCAACTCGGAAAGAACAAAATCGAAACCTTGATCACTACAATTCTCATATGCATCCAAATTTCTACTCCACTTCCCTTCGTCGATACGAACTTTTGGTCTATAAATCCTGCAAATGCCGTGCTTTACTCTCCCGACACTAAGGTTCCAAGAACTGGGGAACTAGCTTTACGGAAAGCCATTCCAGCCAACACTAACATGAAAGTCATTCAGGATTCTTTAGAGGATATCTCCTATTTGCTGAGGATTCCTCAAAGGAAGCCATATGGAACAATGGAGAACAATGTAAAGAAAGCTCTAAAGATAGCGTCCGAAGAAAAGGATGTGATATTGAGAAGTATGCCAGTAGAGCTGAAGGAAAAGGGTTCCTCATTGTATGATTCTCTTATCGATGGGAAGGGTGGATTGAAAGTGCTCATTGATGTTATTAAGGATCAAGATCCAGATAAAGTGTCGTTAGGCCTTGCATCTTCGCTCGATACTATTGCAGAACTCGAGTTATTGCAGGCACCGGGACTTTCATTTTTGTTGCCGGAACAATACTTGCAATACCCAAGGTTAACAGGGAGAGGAACTGTTGAACTCACAATCGAGAAGGGAGATGGATCATCGTTTTCACCAGAATCAGGTGGTGAACCGAGAAAGACGGCAAAAATTCAGGTTATCATAGATGGGTACTCAGCTCCATTAACAGCCGGGAATTTCGCCAAACTGGTAGTTGATGGGGTATATGATGGATCTAAACTCAATTGTGCTAACCAAGCAATTCTTTCCGATAGCGGGATTGACAATAATAATGGCTATAGTGTTCCCCTCGAATTGATGCCATCCGGCCAATTTGAGCCATTATACCGAACAACACTCAGTGTCCAGGATGGAGAATTGCCGGTTCTTCCATTATCAGTTTACGGAGCAGTTGCTATGGGACATAGTGAAGTTTCAGACGAGTACTCATCACCAAATCAGTTTTTCTTCTATCTTTATGACAAGAGAAACTCCGGGTTGGGAGGAATATCGTTTGAGGAAGGTCAATTCTCGGTTTTCGGTTATGCTACTGCTGGGAGAGATGTACTTTCTCAGATAAAAACCGGGGATGTCATTCGATCTGCTAAGTTAGTTGAAGGTCAAGATCGGCTTGTTTTGCCGGGATAA 1425 43.44 MAFPLSSAHLSLLKPSLNLYHISTSGTRTFLPSHFTFPSHQMPTYHVSTTSARSASSSVESRFFCSVSAKNPSMESEGENNVLTNLSTSSCFQLGKNKIETLITTILICIQISTPLPFVDTNFWSINPANAVLYSPDTKVPRTGELALRKAIPANTNMKVIQDSLEDISYLLRIPQRKPYGTMENNVKKALKIASEEKDVILRSMPVELKEKGSSLYDSLIDGKGGLKVLIDVIKDQDPDKVSLGLASSLDTIAELELLQAPGLSFLLPEQYLQYPRLTGRGTVELTIEKGDGSSFSPESGGEPRKTAKIQVIIDGYSAPLTAGNFAKLVVDGVYDGSKLNCANQAILSDSGIDNNNGYSVPLELMPSGQFEPLYRTTLSVQDGELPVLPLSVYGAVAMGHSEVSDEYSSPNQFFFYLYDKRNSGLGGISFEEGQFSVFGYATAGRDVLSQIKTGDVIRSAKLVEGQDRLVLPG 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8860423 8863570 - Conep15aG0109500.1 Cone15ag1072 454200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1072 474 Gene3D - 154 259 IPR023222 -
Cone15ag1072 474 Gene3D - 305 468 IPR029000 -
Cone15ag1072 474 SUPERFAMILY Cyclophilin-like 309 460 IPR029000 -
Cone15ag1072 474 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP37, CHLOROPLASTIC 44 473 IPR044259 -
Cone15ag1072 474 Pfam Peptidyl-prolyl cis-trans isomerase CYP38-like, PsbQ-like domain 148 257 IPR048563 -
Cone15ag1072 474 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 309 461 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone15ag1072 474 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 295 453 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1072 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0121 Cone-Chr11:544299 Cone15ag1072 Cone-Chr15:8860423 2.38E-37 dispersed
Cone15ag1072 Cone-Chr15:8860423 Cone18ag1358 Cone-Chr18:9337285 1.16E-35 dispersed
Cone14ag1081 Cone-Chr14:9055239 Cone15ag1072 Cone-Chr15:8860423 6.20E-243 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g274 . . . . . . . Bma13g00966 . . . . . . . . . . . . . . . . Cla10g00621 Cam10g0614 Cec10g0642 Cco10g0617 Clacu10g0644 Cmu10g1462 Cre10g0855 . . Cone14ag1081 Cone15ag1072 . Csa03g00607 . . . . . Bda12g00859 . . . . . . . . . . Car16g00809 . . . . . . . . . . . . . . . . Lsi05g00699 . Chy06g01716 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007260 1 5 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 2 2 1 37