Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1100 ATGGAAGACTTGTCAACGGAGGAGATCGGAAATACACTACGGATACTCGTAGCAACAGATTGCCATTTGGGATATTTAGAGAAGGATGAAGTACGACGACATGATTCATTCCAAGCATTTGAGGAGATATGTGCAATAGCACAGCAAAAACAGGTGGATTTTTTACTTCTAGGTGGTGATCTTTTCCATGAAAATAAGCCATCAAGGTCAACATTGGTCAAAGCTATTGAGATTCTTCGACACCATTGCCTCAATGATCAGCCAGTGCAGTTTCAAGTTGTCAGCGACCAGACTGTCAACTTCCAAAACATGTTTGGTCATGTAAACTATGAAGATCCTCACTTCAATGTTGGTTTACCAGTATTCAGTATTCATGGAAACCATGATGATCCTGCTGGAGTAGACAACCTTTCTGCGGTAGACATTCTCTCGGCATGCAACCTTGTTAACTATTTTGGGAAAATGGTTCTTGGTGGTTCTGGTGTTGGTCAAATTACTATCTACCCCATTCTTATCCGGAAGGGCTCAACAGCTGTAGCCCTTTATGGTCTAGGAAACATCAGAGATGAACGGTTGAATAGAATGTTTCAGACTCCACATGCTGTACAATGGATGAGACCAGAACCTCAAGAAGACTGTCAAGGGTCAGACTGGTTCAACATTCTGGTACTTCATCAAAACAGAGTAAAGACAAACCCCAAAAATGCAATCAATGAGCATTTCTTACCACGCTTCTTGGACTTCATAGTATGGGGACATGAACATGAATGTCTGGTTGATCCAAAGGAAGTTCCAGGGATGGGCTTCCACATTACACAGCCAGGTTCTTCAGTTGCAACATCACTGATTGATGGAGAATCAAAGCCGAAGCATGTCCTTCTGTTAGAGATTAAGGGGAATCAATACCGGTCAACCAAGATTCCCTTGATGTCTGTCAGACCTTTTGAATACACTGAGATTGTATTGAAGGATGAACCTGACATTGATCCTAATGATCATAATTCAATTCTTGAACATTTGGACAAAGTGGTCAGAAATTTGATAGAGAAATCAAGCAAAAACGCTGTTAATAAATCGGAGCTCAAACTCCCATTAGTCCGGATAAAGGTAGATTACTCTGGATTTATGACAATAAACCCTCAAAGATTCGGACAGAAGTATGTGGGAAAGGTTGCAAATCCTCAAGACATTCTTATATTCTCAAAGGCTTCAAAAAAGGGTCGGAATGAAGGTAAATTTGATGATTCTGAAAGGCTTCGCCCAGAAGAACTAAATCAACAGAACATAGAAGCATTGGTTGCTGAAAGTAATCCGAAAATGGAGATTCTTCCTGTCAATGATTTGGACGTAGCATTACACAATTTTGTGAACAAGGATGACAAGATGGCCTTCTATGCTTGTGTGCAGTACAATCTTGAAGAAACACGAAACAGAATTGCTAAGGATTCGGATGTAGATGTTCTTAAGTTTGAAGAGGAAGATTTGATACTTAAAGTTGGAGAGTGCATGGAGGCAAGGAAACTTTTGCAGGAACAAGTCAAGGAAAGGTCATCTGCTACACACTCTAGGGATCCTACACCTTTCTCATCCTCTGCTCATTCCCTTCAAAATTTCCGAAGTACGAAAAGTACTACAGGAATCGGATCTGAAGTACCATTTAGCGATGATGAAGATGACAGAACACAAGCATCAGCCTCAAAGGCAACAACAAGTAGAGGCCGAAAAGGGTCAACTAGATCAACCAATGATGTTTCGGAGCGTGGTAGAGGTAAAGCTACAAGGGGAAGAGGTAGGGGCAGAGGCTCGAGCAATCTAAAGCAGACCACCCTTGATGCAACTCTTGGGGTCCGCCATTCTCAGAGATCTGCCTCTCGAAGCATGGACATTGATGATAATGATTCTGATTTGAACGAAGAAGATAAAGGAATTGAAGAAGTTAGTGACAGTTCGGAAAATGATGCGAGTGTGCAAGGGAGAGGGCGTAAGAGAGCTACTCCTAGGGTGAGAGGTAGAGGTTCGACCCAATCATCCTCAAAGCGAGGAAAGAAATCGGACCACTCTTCGGTTCAAAGGATTCTCATGAGTAATGATGATGATAATGATGAGGACGAGGATGATGAGGTGGCAAAGAGAGTAAACCAATCTCAAACTCGGGTAACCAGAAATTACGGTGCTCTAAGAAGGTAA 2187 41.98 MEDLSTEEIGNTLRILVATDCHLGYLEKDEVRRHDSFQAFEEICAIAQQKQVDFLLLGGDLFHENKPSRSTLVKAIEILRHHCLNDQPVQFQVVSDQTVNFQNMFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGQITIYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEPQEDCQGSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDFIVWGHEHECLVDPKEVPGMGFHITQPGSSVATSLIDGESKPKHVLLLEIKGNQYRSTKIPLMSVRPFEYTEIVLKDEPDIDPNDHNSILEHLDKVVRNLIEKSSKNAVNKSELKLPLVRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKASKKGRNEGKFDDSERLRPEELNQQNIEALVAESNPKMEILPVNDLDVALHNFVNKDDKMAFYACVQYNLEETRNRIAKDSDVDVLKFEEEDLILKVGECMEARKLLQEQVKERSSATHSRDPTPFSSSAHSLQNFRSTKSTTGIGSEVPFSDDEDDRTQASASKATTSRGRKGSTRSTNDVSERGRGKATRGRGRGRGSSNLKQTTLDATLGVRHSQRSASRSMDIDDNDSDLNEEDKGIEEVSDSSENDASVQGRGRKRATPRVRGRGSTQSSSKRGKKSDHSSVQRILMSNDDDNDEDEDDEVAKRVNQSQTRVTRNYGALRR 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9025613 9030087 - Conep15aG0112600.1 Cone15ag1100 454228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1100 728 Gene3D Mre11, capping domain 314 412 IPR038487 -
Cone15ag1100 728 MobiDBLite consensus disorder prediction 513 728 - -
Cone15ag1100 728 PANTHER DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11 7 696 - GO:0000014(PANTHER)|GO:0000723(PANTHER)|GO:0000724(PANTHER)|GO:0006303(PANTHER)|GO:0007095(PANTHER)|GO:0030870(PANTHER)|GO:0035861(PANTHER)|GO:0042138(PANTHER)|GO:0097552(PANTHER)
Cone15ag1100 728 MobiDBLite consensus disorder prediction 522 550 - -
Cone15ag1100 728 Pfam Calcineurin-like phosphoesterase 13 257 IPR004843 GO:0016787(InterPro)
Cone15ag1100 728 FunFam Double-strand break repair protein 314 412 - -
Cone15ag1100 728 MobiDBLite consensus disorder prediction 600 622 - -
Cone15ag1100 728 CDD MPP_Mre11_N 14 282 IPR041796 -
Cone15ag1100 728 NCBIfam DNA repair protein (mre11) 11 404 IPR003701 GO:0004520(InterPro)|GO:0006302(InterPro)|GO:0008296(InterPro)|GO:0030870(InterPro)
Cone15ag1100 728 SMART Mre11_DNA_bind_2 302 455 IPR007281 GO:0004519(InterPro)|GO:0005634(InterPro)|GO:0006302(InterPro)|GO:0030145(InterPro)
Cone15ag1100 728 Gene3D - 10 313 IPR029052 -
Cone15ag1100 728 MobiDBLite consensus disorder prediction 564 578 - -
Cone15ag1100 728 MobiDBLite consensus disorder prediction 632 646 - -
Cone15ag1100 728 PIRSF DSB_repair_MRE11 1 716 IPR003701 GO:0004520(InterPro)|GO:0006302(InterPro)|GO:0008296(InterPro)|GO:0030870(InterPro)
Cone15ag1100 728 FunFam Double-strand break repair protein 8 313 - -
Cone15ag1100 728 Pfam Mre11 DNA-binding presumed domain 302 455 IPR007281 GO:0004519(InterPro)|GO:0005634(InterPro)|GO:0006302(InterPro)|GO:0030145(InterPro)
Cone15ag1100 728 SUPERFAMILY Metallo-dependent phosphatases 13 348 IPR029052 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1100 K10865 - - csv:101217141 1104.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1088 Cone-Chr14:9131965 Cone15ag1100 Cone-Chr15:9025613 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g300 . . . . . . . . . . . . . . . Cpe06g00719 . . . . . . . . Cla11g01805 Cam11g1871 . Cco11g1901 Clacu11g2035 Cmu11g1840 Cre11g2246 . . Cone14ag1088 Cone15ag1100 Lsi04g01279 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010909 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 28