Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1103 ATGGCGGTAGGGAAGAAACAGAAATCAAGCTCCGACGCGAAGCTATTCAGGCTATGTCCGTTCTGGCAGTCGGGAAGTACGTCGTCTTCTTCTTCTTCGACTCAGAATCTTCATCAAAGTATCAATGGACCGAGCGACCGACATACTTCCACCAAAACGGTGTCATCTGTTGCGAGGTCGCTCCTTCTTCCTCGGCGGAGGCTCCTACTCGACCCTACTAATTTTCTCTACTTCCCCTATGAACCAGGAAAGCAGGTGAAAAGTGCTATTAAACTGAAGAATAATAGCAAATCTCATGTAGCTTTTAAGTTTCAAACTACGTCTTCAAAGAGTTGTTATATGCGTCCGCCTGGCGGAATTCTTGCTCCTGGAGAAAGCGTTATCGCGACGGCTGATTGGACAGTTTTTAGGTTTGTGGAGCTTCCGGAGAACAACAAAAAGCAGGTTGATCAGAATCGGAAGATTAAGTTTAAGATCATGAGCTTGAAAGTGAAACAAGGGATAGAATATGTACCTGAGCTGTTTGATGAACAAAAAGATCAAGTTGCAGTTGAACGGATTTTACGGGTCGTGTTCTTAAATGCAGAGCGGCCTACTCCTGCGTTGGAAAAACTGAAGCGGCAATTGGCGGAAGCAGAGGCTGCTCTTGAAGCTCGTAAGAAACCCCCTGCAGAAACGGGTGCTCAAGTTCTAGGGGAAGGTCTCGTGATAGATGAATGGAAAGAGAGAAGAGAGAAGTATTTGGCTCGTCAACAGGTCGAAGCAGTAGACGCATCTAAAGTTTGA 786 45.93 MAVGKKQKSSSDAKLFRLCPFWQSGSTSSSSSSTQNLHQSINGPSDRHTSTKTVSSVARSLLLPRRRLLLDPTNFLYFPYEPGKQVKSAIKLKNNSKSHVAFKFQTTSSKSCYMRPPGGILAPGESVIATADWTVFRFVELPENNKKQVDQNRKIKFKIMSLKVKQGIEYVPELFDEQKDQVAVERILRVVFLNAERPTPALEKLKRQLAEAEAALEARKKPPAETGAQVLGEGLVIDEWKERREKYLARQQVEAVDASKV 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9043368 9045314 - Conep15aG0112900.1 Cone15ag1103 454231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1103 261 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 69 251 IPR016763 GO:0005789(InterPro)|GO:0005789(PANTHER)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
Cone15ag1103 261 Pfam MSP (Major sperm protein) domain 68 182 IPR000535 -
Cone15ag1103 261 Gene3D Immunoglobulins 64 196 IPR013783 -
Cone15ag1103 261 Coils Coil 202 222 - -
Cone15ag1103 261 SUPERFAMILY PapD-like 61 202 IPR008962 -
Cone15ag1103 261 ProSiteProfiles Major sperm protein (MSP) domain profile. 67 193 IPR000535 -
Cone15ag1103 261 MobiDBLite consensus disorder prediction 25 53 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1103 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1103 Cone-Chr15:9043368 Cone5ag1742 Cone-Chr5:12396970 2.56E-102 dispersed
Cone12ag1428 Cone-Chr12:10377200 Cone15ag1103 Cone-Chr15:9043368 3.31E-87 wgd
Cone14ag1092 Cone-Chr14:9148868 Cone15ag1103 Cone-Chr15:9043368 5.59E-155 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g304 . . . . . . . . . . . . . . . Cpe06g00722 Cpe02g00727 . . . . . . . Cla11g01808 Cam11g1874 Cec11g1897 Cco11g1905 Clacu11g2038 Cmu11g1843 Cre11g2248 . . Cone14ag1092 Cone15ag1103 Lsi04g01276 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000537 4 3 4 3 5 2 5 3 2 3 3 3 3 3 4 4 2 5 5 3 5 3 3 3 3 3 3 6 6 2 106