Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1107 ATGGCTGCCTCTTCTCTCTCTCCTGCAACACTTACCCAGCTCAGTGCTAGTAAGAATGGTATATTTGGATCATCACAAGCAGCAATGGTTAAACCCAGTAAGAGCCAGCTTTTGCAGGGAAAGGAAAAGGGAATGAGAATCACTTGCCAGGCCGGAAGCATCGCGGCCGACCGGGTCCCGGACATGGAGAAAAGAAAGCTTATGAATCTGCTTCTGTTGGGTGCTATCTCTCTTCCCACTGCTGGAATGTTGGTTCCTTATGCAACTTTCTTTGCTCCACCCGGTTCCGGTGGTTCTGGTGGGGGTACCGTAGCAAAGGATGCCCTTGGAAATGATGTAATTGCAGCTGAATGGCTCAAGACCCATGGACCTAATGATAGAACCCTCACTCAAGGCTTGAAGGGAGATCCCACATACCTAGTTGTGGAGGCTGATAGAACCTTAGCAACTTATGGTATAAATGCAGTGTGCACACATCTAGGTTGTGTGGTGCCATGGAATGCTGCTGAAAACAAGTTCATTTGCCCTTGCCATGGTTCCCAATACAATAACCAAGGACGGGTTGTTCGGGGCCCCGCTCCACTGTCATTGGCACTAGCACACGCTGATATCGATGACGGGAAGGTACTGTTTGTGCCATGGGTTGAAACGGATTTCAGAACAGGAGAGAATCCATGGTGGGCTTGA 687 49.49 MAASSLSPATLTQLSASKNGIFGSSQAAMVKPSKSQLLQGKEKGMRITCQAGSIAADRVPDMEKRKLMNLLLLGAISLPTAGMLVPYATFFAPPGSGGSGGGTVAKDALGNDVIAAEWLKTHGPNDRTLTQGLKGDPTYLVVEADRTLATYGINAVCTHLGCVVPWNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVLFVPWVETDFRTGENPWWA 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9057548 9059186 - Conep15aG0113300.1 Cone15ag1107 454235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1107 228 PRINTS Rieske 2Fe-2S subunit signature 173 185 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Cone15ag1107 228 PRINTS Rieske 2Fe-2S subunit signature 185 197 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Cone15ag1107 228 PRINTS Rieske 2Fe-2S subunit signature 152 163 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Cone15ag1107 228 SUPERFAMILY ISP domain 56 227 IPR036922 GO:0051537(InterPro)
Cone15ag1107 228 Gene3D Single helix bin 50 93 - -
Cone15ag1107 228 FunFam Cytochrome b6-f complex iron-sulfur subunit 50 93 - -
Cone15ag1107 228 Hamap Cytochrome b6-f complex iron-sulfur subunit [petC]. 51 228 IPR023960 GO:0016020(InterPro)|GO:0045158(InterPro)|GO:0051537(InterPro)
Cone15ag1107 228 CDD Rieske_cytochrome_b6f 103 228 - -
Cone15ag1107 228 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 115 211 IPR017941 GO:0051537(InterPro)
Cone15ag1107 228 Pfam Rieske [2Fe-2S] domain 140 195 IPR017941 GO:0051537(InterPro)
Cone15ag1107 228 Gene3D - 94 228 IPR036922 GO:0051537(InterPro)
Cone15ag1107 228 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 44 215 IPR014349 GO:0005886(PANTHER)|GO:0016491(PANTHER)|GO:0051537(InterPro)
Cone15ag1107 228 FunFam Cytochrome b6-f complex iron-sulfur subunit 94 228 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1107 K02636 - - vvi:100258879 372.474
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1097 Cone-Chr14:9168980 Cone15ag1107 Cone-Chr15:9057548 2.00E-163 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g315 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1097 Cone15ag1107 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005070 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 39