Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1116 ATGGCAACTTTCTCTTTGAGTCTTTTCATCCTTTCCCATCTACTCTTTTCTTTCTTCAAACTCTCAACTTCAATTCATTCCATAACTCAATTTCAATCCCTCATAGATGGCAACACTTCCTTACATTACGCGTCTCTTGCGACCTTTCCGAGTGGTTTTTGCGACACTTATGCCATTTGTGGCCCTTACGGATATTGTGATCCGAGTAAATCACCTTCTTGCTTATGTTTAGAAGGTTTCAAGGTTAAATCTCAGGAAAAATGGAATATGCTAGATTTCGTGGACGGGTGTGTAAGGGACAAGCCGTTGAATTGTTCGGAAAATGATGTCGGGTTTAGGATGTTTACCGAAATGAAAGCGCCGGCTGTTACTACTTCTTGGGTGAATAGGAGTATGAACATTAGAGAGTGTAGGGTTAAGTGTCTGAGTAATTGTTCGTGTTCGGCTTACGGAAATTCAGAAGGGAGTGGAAGTGGTTGTGTTAATTGGTTTGGAGATTTGCTTGATCTTAAGCTTGTTCCAAGTGGTGGGCAGGATTTATATGTTCGGATGCCGGCTTCGGAATTAAAATCAGAATCTAAGAAGGGGAAGAAGAAGATTGGACTGGCAATTGGTTGTGCCGCGGCTTCGGTTTTTGCGATCCTCTTTCTTGGATTATACATTTATTGTAGAAAGAGTTCTCACTTACAATTAGACAAGGAAGAAAAAGAAGACCTGGAGCTTCCATTGTTTGACTTGTCCACCATAACAAGTGCTACTGATAATTTTTCAATCAACAAGAAGCTTGGAGAAGGTGGCTTTGGACCTGTATACAAGGGCAGACTAGCAAATGGACAAGAAATTGCAGTGAAGAGGCTATCAAAGAATTCTGGACAAGGACAGAATGAGTTTAAGAATGAAGTGATATTAATAGCAAAACTTCAACACCGAAATCTCGTAAAGCTTCTTGGCTGCTGCATTCAGGGGGAGGAGAAAATGCTCATCTATGAATACATGCCGAATAGAAGCTTGGATGCCTTCATATTTGATCAAACACAAGGAAAACTATTAAATTGGGCTACACGGTTCCGTATTATCTGTGGGATCGCTCGTGGACTTGTTTATCTTCATCAAGATTCGAGATTAAGGATAATACATAGAGATCTCAAGGCTAGCAATGTCTTGCTTGACCTTGATATGAGCCCGAAAATCTCGGATTTTGGTCTTGCTAGAATTTTTGGAGGAGATCAAACAGAAGCAAATACCAGAAGGGTTGTTGGAACTTATGGTTACATGGCACCGGAATATGCTATCGACGGACAATTCTCGGTAAAATCTGATGTCTTCAGTTTCGGAATCTTAATGTTAGAGATAATAAGTGGAAAGAGAAATCGAGGATTTTATCGTCCAAACAGCAATGATCTTAACCTTATCGCATACGCATGGAGGTTGTGGAAAGATGGCCAACTTGCAGGACTGATTGACGAAACCTTTGGTGACTCATTTACATTCTCGGAAGTTCTACGGTGCATCCATATCGGTCTCTTATGTGTTCAACAAGATCCTGAAGATCGGCCCACCATGCCGTCTGTGATAATGATGTTAGGTAGTGAGAATAGTGTCTTGCCTCAACCTAAGCAACCAGGTTTCTCTATGGAGGGGGATTTCGGTGATAAAGATTTCCAAGCGAGCAACGATCAATTCAGTTCGACAAATGAAATGAGCATTACAGTACTCCAGCCTAGATGA 1728 41.2 MATFSLSLFILSHLLFSFFKLSTSIHSITQFQSLIDGNTSLHYASLATFPSGFCDTYAICGPYGYCDPSKSPSCLCLEGFKVKSQEKWNMLDFVDGCVRDKPLNCSENDVGFRMFTEMKAPAVTTSWVNRSMNIRECRVKCLSNCSCSAYGNSEGSGSGCVNWFGDLLDLKLVPSGGQDLYVRMPASELKSESKKGKKKIGLAIGCAAASVFAILFLGLYIYCRKSSHLQLDKEEKEDLELPLFDLSTITSATDNFSINKKLGEGGFGPVYKGRLANGQEIAVKRLSKNSGQGQNEFKNEVILIAKLQHRNLVKLLGCCIQGEEKMLIYEYMPNRSLDAFIFDQTQGKLLNWATRFRIICGIARGLVYLHQDSRLRIIHRDLKASNVLLDLDMSPKISDFGLARIFGGDQTEANTRRVVGTYGYMAPEYAIDGQFSVKSDVFSFGILMLEIISGKRNRGFYRPNSNDLNLIAYAWRLWKDGQLAGLIDETFGDSFTFSEVLRCIHIGLLCVQQDPEDRPTMPSVIMMLGSENSVLPQPKQPGFSMEGDFGDKDFQASNDQFSSTNEMSITVLQPR 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9119105 9121606 + Conep15aG0114200.1 Cone15ag1116 454244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1116 575 Gene3D Transferase(Phosphotransferase) domain 1 332 537 - -
Cone15ag1116 575 Pfam S-locus glycoprotein domain 38 83 IPR000858 GO:0048544(InterPro)
Cone15ag1116 575 CDD STKc_IRAK 262 528 - -
Cone15ag1116 575 Pfam Protein tyrosine and serine/threonine kinase 257 525 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag1116 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 377 389 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag1116 575 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 52 543 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone15ag1116 575 Gene3D Phosphorylase Kinase; domain 1 230 331 - -
Cone15ag1116 575 SMART ntp_6 107 184 IPR003609 -
Cone15ag1116 575 ProSiteProfiles Protein kinase domain profile. 256 535 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag1116 575 SMART serkin_6 256 528 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag1116 575 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 222 331 - -
Cone15ag1116 575 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 332 536 - -
Cone15ag1116 575 ProSiteProfiles PAN/Apple domain profile. 105 185 IPR003609 -
Cone15ag1116 575 Pfam Domain of unknown function (DUF3403) 530 575 IPR021820 GO:0004674(InterPro)
Cone15ag1116 575 SUPERFAMILY Protein kinase-like (PK-like) 239 536 IPR011009 -
Cone15ag1116 575 CDD PAN_AP_plant 102 185 - -
Cone15ag1116 575 Pfam PAN-like domain 105 170 IPR003609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1104 Cone-Chr14:9211550 Cone15ag1116 Cone-Chr15:9119105 9.87E-272 dispersed
Cone14ag1106 Cone-Chr14:9218777 Cone15ag1116 Cone-Chr15:9119105 0 dispersed
Cone15ag1116 Cone-Chr15:9119105 Cone15ag1122 Cone-Chr15:9148354 0.00E+00 dispersed
Cone15ag1114 Cone-Chr15:9112166 Cone15ag1116 Cone-Chr15:9119105 7.88E-267 proximal
Cone15ag1116 Cone-Chr15:9119105 Cone15ag1117 Cone-Chr15:9121978 1.75E-179 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82163 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1116 - - - 0.0