Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1127 ATGATGGACCTTCTCTGCAAAACATACTCAAACACTTCCGACGAAGACAAAGTCATCGATGAAGAAGCAGAGGATGAACCCAAGTCCAAAAGGCTGACCCTCGCCTCTTCGAAAGAACCCAAATACCCGAAATTCTGGGCCAAGGAAGTTCCTTTGCATTGCCCGAATCCGAATCCGGAGCTTCGAAATGAGGGTCCGGTTCCTGGACGCTATATTTCGAAGAGAGAGCGAGCTCTCATGGGTTTATCATCTGATTTCGCTTCTAGGGTTTCTGACACGGGCCCGGATTCTTCGACTAATTCCTCAACTGTTTTTGGAAGTCTTTCGGATTTAGACATTCATCAAGATATCTCGTCATTATTGAGACATAGAGCAAAGGGCCCAAAAAAACTGAGCAAAATATGTGAGAGGTTATCTGTAGCTTTAGAAAGCCATAAGAAAGCTGTCAATGCAATACAATGGTCACCTACTCATGTTCATCTTCTTGCCTCTGCCGGGATGGATCAGAAAATCTGCATATGGAATGTATGGAGCAAGGATCAGAAAATCGCCCGAGTTCTAAACTCTCACACTGCTGCTGTTAAGGACGTGAAGTGGTCCCCCCAAGGCCTATCCATTCTTTCCGGTGGATATGATTGCATATCAAGGCTAATTGATGTTGAGAAGGGGGTAGAAACTCATTCATTTAAGGAGGATCAAGCAATTGGAGTGTTAAAATTTCACCCGAACAACCCAAACCTCTTTCTTTCGGGTGGATTGAAAGGCGGGCTTAAGTTGTGGGATGTTAGAAATGGCAAGGTGGTTCATGAGTATATTAGGCGTCTGGGTCCAATCCTTGATGTTGAATTCAATACAAATGGGAAGCAATTTATCTCTTCTAGTGATGTTTCTGGGTCCAATATTAGTGAGAATTCTATAATTGTTTGGGATGTTTCACGGCAAGTTCCGCTTTCTAATCAGGTTTATGTAGAAGCCTATACATGTCCATGTGTGAGATACCACCCAGTTGATCCAACCTTTGTTGCCCAATCAAACGGAAACTATATTGCGATCTTCTTCTCGACCCCTCCTTTCAAGCTTGATAAATATAAGAGGTATGAAGGCCATGGGGTTTTTGGGTTTCCCGTAAAGTGTAATTTCAGCTTGGATGGTGAGAAACTCATCTCCGGCTCTTCCGATGGATCTATATACTTCTACAACTATAGATCATCTCAACTTGTTCGGAAAATCAAAGCATATGAGCAAGCTTGCATCGATGTTTCTGTCCACCCCATTTTGCCCAATGTAATCGCTTCATCTAGTTGGAATGGGGAGGTTTCAGTGTTTGAATGA 1332 43.17 MMDLLCKTYSNTSDEDKVIDEEAEDEPKSKRLTLASSKEPKYPKFWAKEVPLHCPNPNPELRNEGPVPGRYISKRERALMGLSSDFASRVSDTGPDSSTNSSTVFGSLSDLDIHQDISSLLRHRAKGPKKLSKICERLSVALESHKKAVNAIQWSPTHVHLLASAGMDQKICIWNVWSKDQKIARVLNSHTAAVKDVKWSPQGLSILSGGYDCISRLIDVEKGVETHSFKEDQAIGVLKFHPNNPNLFLSGGLKGGLKLWDVRNGKVVHEYIRRLGPILDVEFNTNGKQFISSSDVSGSNISENSIIVWDVSRQVPLSNQVYVEAYTCPCVRYHPVDPTFVAQSNGNYIAIFFSTPPFKLDKYKRYEGHGVFGFPVKCNFSLDGEKLISGSSDGSIYFYNYRSSQLVRKIKAYEQACIDVSVHPILPNVIASSSWNGEVSVFE 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9184419 9187894 + Conep15aG0115300.1 Cone15ag1127 454255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1127 443 ProSitePatterns Trp-Asp (WD) repeats signature. 162 176 IPR019775 -
Cone15ag1127 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 176 IPR001680 GO:0005515(InterPro)
Cone15ag1127 443 SUPERFAMILY WD40 repeat-like 140 442 IPR036322 GO:0005515(InterPro)
Cone15ag1127 443 Gene3D - 122 443 IPR015943 GO:0005515(InterPro)
Cone15ag1127 443 MobiDBLite consensus disorder prediction 1 36 - -
Cone15ag1127 443 Pfam WD domain, G-beta repeat 365 400 IPR001680 GO:0005515(InterPro)
Cone15ag1127 443 Pfam WD domain, G-beta repeat 142 175 IPR001680 GO:0005515(InterPro)
Cone15ag1127 443 SMART WD40_4 264 310 IPR001680 GO:0005515(InterPro)
Cone15ag1127 443 SMART WD40_4 403 443 IPR001680 GO:0005515(InterPro)
Cone15ag1127 443 SMART WD40_4 180 219 IPR001680 GO:0005515(InterPro)
Cone15ag1127 443 SMART WD40_4 359 400 IPR001680 GO:0005515(InterPro)
Cone15ag1127 443 SMART WD40_4 135 175 IPR001680 GO:0005515(InterPro)
Cone15ag1127 443 SMART WD40_4 222 261 IPR001680 GO:0005515(InterPro)
Cone15ag1127 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515(InterPro)
Cone15ag1127 443 Pfam Eukaryotic translation initiation factor eIF2A 179 312 IPR013979 -
Cone15ag1127 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 270 IPR001680 GO:0005515(InterPro)
Cone15ag1127 443 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 2 443 IPR053053 -
Cone15ag1127 443 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 176 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1127 K24742 - - cit:102619979 583.563
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1127 Cone-Chr15:9184419 Cone16ag0771 Cone-Chr16:8648337 4.34E-08 dispersed
Cone14ag1113 Cone-Chr14:9274096 Cone15ag1127 Cone-Chr15:9184419 2.73E-27 transposed
Cone14ag1112 Cone-Chr14:9273325 Cone15ag1127 Cone-Chr15:9184419 5.27E-63 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g385 . . . . . . Bma10g00525 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1113 Cone15ag1127 . . . . Blo07g00929 . Bda05g00747 . . Bpe03g00812 . . . . . . . Car04g00870 . . Cpe01g00843 . . . . . . . . . . . . . . . . Chy06g01770 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008063 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 2 2 2 1 1 1 1 33