Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1137 ATGGTCTCATCGGAAAACAGCAACTGGTTTTTCGATTATGGGTTTATCGAAGATATTCCTGTTCCAGATGCCAATTTTCCTGTGGCAAATTCTGGTTTCTCTTGTTGGCCTGTTCAAGCCCTCAATGGAGCCTCTAATATCAGCATGGATATTGAGGGATCATTGGCAGAGTCTGATGGCCCTAAGGAACCAGGTTCAAAAAAGAGAGTTAGATCGGAATCAAATTGCCCATCTAGCTCGAAAGCGTGCAGGGAGAAGTTGCGTAGGGACAGGCTGAATGACAAGTTTCTTGAACTGGGTTCTATCTTGGAGCCCGAACGGGCACCAAAAACAGACAAGGTTGCTATATTGATTGATGCCGTTCGAATGGTGACACAGTTACGGGGCGAAGCCCAGAAGTTGAAGGACTCAAATTCAAGTCTTCAAGACAAGATCAAAGAGCTCAAGGCTGAGAAGAATGAGCTTAGGGATGAGAAGCAGAGACTAAAGGCAGAGAAGGAAAAGTTGGAGCAACAAGTGAAGTCCATGAACGTGCAACCCAGCTTCTTGCCGGGCCCACCTGCAATCCCAACCGCATTTTCTGCTGCTGCCCACCAGGGTCAAGCTCCAGGCAACAAGATGGTGCCCTTCATTGGCTACCCAGGAGTTGCCATGTGGCAGTTTATGCCTCCGGCAGCAGTGGACACCTCACAGGACCACGTTCTCCGGCCACCAGTTGCCTGA 723 49.24 MVSSENSNWFFDYGFIEDIPVPDANFPVANSGFSCWPVQALNGASNISMDIEGSLAESDGPKEPGSKKRVRSESNCPSSSKACREKLRRDRLNDKFLELGSILEPERAPKTDKVAILIDAVRMVTQLRGEAQKLKDSNSSLQDKIKELKAEKNELRDEKQRLKAEKEKLEQQVKSMNVQPSFLPGPPAIPTAFSAAAHQGQAPGNKMVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9236738 9238982 + Conep15aG0116400.1 Cone15ag1137 454265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1137 240 Gene3D - 66 125 IPR036638 GO:0046983(InterPro)
Cone15ag1137 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 151 IPR036638 GO:0046983(InterPro)
Cone15ag1137 240 FunFam Transcription factor bHLH34 67 125 - -
Cone15ag1137 240 SMART finulus 82 133 IPR011598 GO:0046983(InterPro)
Cone15ag1137 240 MobiDBLite consensus disorder prediction 54 82 - -
Cone15ag1137 240 Coils Coil 124 179 - -
Cone15ag1137 240 Gene3D arf6 gtpase in complex with a specific effector, jip4 126 179 - -
Cone15ag1137 240 Pfam Helix-loop-helix DNA-binding domain 80 128 IPR011598 GO:0046983(InterPro)
Cone15ag1137 240 CDD bHLH_AtILR3_like 81 156 - -
Cone15ag1137 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 127 IPR011598 GO:0046983(InterPro)
Cone15ag1137 240 PANTHER BHLH TRANSCRIPTION FACTOR 6 240 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1137 Cone-Chr15:9236738 Cone1ag0107 Cone-Chr1:591227 2.29E-52 dispersed
Cone12ag1399 Cone-Chr12:10289289 Cone15ag1137 Cone-Chr15:9236738 1.10E-70 wgd
Cone14ag1119 Cone-Chr14:9321339 Cone15ag1137 Cone-Chr15:9236738 3.34E-129 wgd
Cone15ag1137 Cone-Chr15:9236738 Cone8ag1455 Cone-Chr8:11228658 1.32E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44902 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1137 - - - 0.0