Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1157 ATGATGCAACAGCCAAATTCCGGTATGGTTCCATCGCTGCAGGTGACGTCCGATCAGCAGTATCATCATCAACAAAATCAGGTGCCACCGCAGCAGTGGATGATGATGCCGCCTCAGCAGCAAATTCCTTCGCCGGTACCGCCGCCAGTTGGTTGGACCCCACAGGCCGTGCCTCCTCCGATTCCAAGCCAGGCTCAGCAGTACCCGGCCGCTACGAGTGGTGGATCTGATGAGATCCGCTCTCTGTGGATCGGAGATTTGCAGCAGTGGATGGACGAGAGCTATCTCGTCAGCTGCTTTCCTCAAACCGGCGAGGTTGTCTCTGCAAAGGTTATTCGAAATAAGCAAACGGGAATACCAGATGGATATGGTTTCATTGAGTTTGTTTCTCGTGCTGCTGCAGAGAGGATTTTACAAACTTATAATGGCACATTGATGCCAAACACTGAGCAAAATTTCCGACTGAATTGGGCTACTCTTGGTGCTGGTGAGAGGCGTCAGGATGATGGTCCTGACTACACCATTTTCGTGGGAGATTTGGCCGGTGATGTTACTGATTATACCCTCCAGGAGACATTTAGATCTGCATACCATTCTGTGAAAGGCGCTAAAGTTGTTACTGATAGGGTCACTGGGCGTACTAAAGGTTACGGTTTTGTTAGATTTGGTGATGAAAATGAACAATTGCGGGCCCTCACTGAGATGAATGGCATGTATTGTTCCTCTCGGCCCATGCGAATTGGAGCTGCTGCTTCAAAGAAGCCGATTGGAGTTCAACAGTATCAGAAAGCTGCCTACCAGACTTCTCCAGGAAATCAAGGGGAGAGTGATCCAGATAATACAACAATCTTTGTTGGGGGCCTAGACTCTAGTGTCTCTGATGACCATTTAAGACAGGTCTTCGGCCAATTTGGGGAACTCGTTCATGTCAAAATACCAGCAGGCAAGCGCTGTGGCTTTGTTCAGTTTGCTAATAGAAATTGTGCAGAGCAAGCTTTGTTAATCTTGAATGGAACACAACTAGGAGGACAAAGTGTTCGCCTTTCATGGGGGCGCAGCCCAAACAAACAGGCTCAACCAGATCAGGCTCAATGGAATGTCGGAGGAGGGGCTGGTGGGTATTATGGATATCCACAAGGGTATGACACATATGGATATGCTGCAAATCCACAAGACCCAAACATGTACTATGGAGGTTACCCCGGCTATGGAAATTACCAGCAACCAGGGGCTTACCAACAGCCACAGCAGTGA 1254 48.8 MMQQPNSGMVPSLQVTSDQQYHHQQNQVPPQQWMMMPPQQQIPSPVPPPVGWTPQAVPPPIPSQAQQYPAATSGGSDEIRSLWIGDLQQWMDESYLVSCFPQTGEVVSAKVIRNKQTGIPDGYGFIEFVSRAAAERILQTYNGTLMPNTEQNFRLNWATLGAGERRQDDGPDYTIFVGDLAGDVTDYTLQETFRSAYHSVKGAKVVTDRVTGRTKGYGFVRFGDENEQLRALTEMNGMYCSSRPMRIGAAASKKPIGVQQYQKAAYQTSPGNQGESDPDNTTIFVGGLDSSVSDDHLRQVFGQFGELVHVKIPAGKRCGFVQFANRNCAEQALLILNGTQLGGQSVRLSWGRSPNKQAQPDQAQWNVGGGAGGYYGYPQGYDTYGYAANPQDPNMYYGGYPGYGNYQQPGAYQQPQQ 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9359542 9363689 + Conep15aG0118600.1 Cone15ag1157 454285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1157 417 Gene3D - 172 249 IPR012677 -
Cone15ag1157 417 SUPERFAMILY RNA-binding domain, RBD 79 253 IPR035979 GO:0003676(InterPro)
Cone15ag1157 417 FunFam Polyadenylate-binding protein RBP45 10 164 - -
Cone15ag1157 417 FunFam Polyadenylate-binding protein RBP45C 165 257 - -
Cone15ag1157 417 Pfam RNA recognition motif 283 346 IPR000504 GO:0003723(InterPro)
Cone15ag1157 417 Pfam RNA recognition motif 175 245 IPR000504 GO:0003723(InterPro)
Cone15ag1157 417 Pfam RNA recognition motif 82 150 IPR000504 GO:0003723(InterPro)
Cone15ag1157 417 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 52 356 IPR050825 GO:0003729(PANTHER)|GO:0003729(InterPro)|GO:0005829(PANTHER)
Cone15ag1157 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 353 IPR000504 GO:0003723(InterPro)
Cone15ag1157 417 FunFam polyadenylate-binding protein RBP45 264 361 - -
Cone15ag1157 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 173 252 IPR000504 GO:0003723(InterPro)
Cone15ag1157 417 Gene3D - 256 389 IPR012677 -
Cone15ag1157 417 SUPERFAMILY RNA-binding domain, RBD 261 383 IPR035979 GO:0003676(InterPro)
Cone15ag1157 417 CDD RRM2_SECp43_like 172 251 - -
Cone15ag1157 417 MobiDBLite consensus disorder prediction 1 28 - -
Cone15ag1157 417 SMART rrm1_1 282 349 IPR000504 GO:0003723(InterPro)
Cone15ag1157 417 SMART rrm1_1 174 248 IPR000504 GO:0003723(InterPro)
Cone15ag1157 417 SMART rrm1_1 81 156 IPR000504 GO:0003723(InterPro)
Cone15ag1157 417 MobiDBLite consensus disorder prediction 53 75 - -
Cone15ag1157 417 CDD RRM1_SECp43_like 81 159 - -
Cone15ag1157 417 Gene3D - 79 159 IPR012677 -
Cone15ag1157 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 160 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1157 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1157 Cone-Chr15:9359542 Cone6ag0064 Cone-Chr6:343548 5.88E-215 dispersed
Cone14ag1139 Cone-Chr14:9445105 Cone15ag1157 Cone-Chr15:9359542 1.15E-263 wgd
Cone15ag1157 Cone-Chr15:9359542 Cone6ag1084 Cone-Chr6:6571176 1.62E-172 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g447 Blo02g00819 . Bda06g01045 . . . . Bma12g00469 . . Cma02g00443 Cma20g00892 Car02g00300 Car20g00769 . . . . . . . . . . . . . . . . . Cone6ag0064 Cone9ag0078 Cone14ag1139 Cone15ag1157 Lsi10g00304 . Chy11g00443 . . . . . . . . . . Cmo02g00452 Cmo20g00899 . . . . . Cpe05g01219 . . . . . . . Cla09g01707 Cam09g1803 Cec09g1863 Cco09g1956 . . Cre01g0704 . Csa02g01195 . Cme11g00517
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002064 4 5 3 6 2 2 0 1 1 0 0 2 2 2 2 3 2 6 1 2 1 2 2 2 1 2 2 3 2 2 65