Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1160 ATGAGTGTGGTGGGCTTTGATGTTGGAAATGAAAACTGTGTTATTGCCATAGCGAAACAGAGAGGTATTGATGTTTTGTTGAATGATGAATCAAAACGGGAAACCCCTTCAATGGTTTGTTTTGGAGAAAAACAGCGGTTTCTAGGATCTGCAGGTGCTGCGTCTGCAATGATGAACCCAAAATCCACAATATCTCAGGTGAAGAGACTAATTGGCTGGAGCTATATGGAGCCTGATATTCAAAAAGATCTTAAGATGTTCCCTTTTGAGACTTCAGAAGCCCCAGATGGTGGCATTTTGATTCACTTGAAATACTTGGGTGAGACTCATTCATTTACCACGGTTCAGATAATGGGGATGCTCTTAGGACATTTGAAAGATGTAACTGAGAAAAATGTGGAAACACCCATTTCGGATTGCGTTATTGGGATTCCATCATACTTTACTGATATTCAGAGACGTGCATATTTGAATGCTGCAGCAATTGCTGGGTTGAGACCTTTGAGACTCATGCATGACTGCACCGCAATTGCACTTAGTTATGGGATTTACAAAAACGATTTGGCCATTGGAGGACCCACTCATGTCGCCTTTGTTGATATCGGTCATTGTGATACTCAGGTCTCCATCGTGTCTTTTGAGGCTGGACATATGTGGGTTTTATCTCATACTTTTGATAGAAACTTAGGAGGCAGAGACTTCGATGAGGTTTTGTTTAGTTATTTTACAGCACAATTTAAGGAACAGTACAATATTGATGTATATTCTAACATCAAAGCATGTGTCAGACTGCATTCTGCATGTGAGAAATTGAAGAAAGTTCTGAGTGCAAATGCTGAGGCACCTCTGAATATTGAGTGCTTGATGGATGAGAAAGATGTTAAGGGATTTATCAAAAGAGAAGATTTTGAGAAACTTTCTTCTGGATTACTGGAGAGGATTACAATTCCTTGTAGAAAAGCTTTAGCTAATGCAGGATTGACTGTAGAAAGGATCCATTCAGTTGAGCTCGTGGGATCAGGGTCTAGGATTCCAGCGATCAATAGATTGTTAACTTCTTTATTCGGGAGAGAGCCTAGCCGGACACTCAATGCAAGTGAATGTGTAGCTCGCGGATGTGCTCTGCAGTGTGCAATGCTAAGTCCAACATTCCGGGTCAGAGAATATGAGGTTCAGGATACGCTTCCTTTCTCCATTGGATTTTCCTTAGATGGAGGCCCAATTAGCAAAGGTTCAGATGGTGTTCTATTCCCCAGAGCCCAATCTTTTCCCAGTGCTAAAGTTCTCACATTCCAACGAAGCAATTTGTTCTATCTAGAGGCATTTTATGTTAATCCGGATGAACTGCCTGCTGGTGTACCCCTAAAGATTAGCTATTTCACGATTGGTCCTTTACAAGGTTCTCATAACGAGAAATCGAGAGTTAAAATTAGAGTTCAATTAAATCTCCATGGCATTGTTACAATTGAATCTGCTACATTGATAGATGATCAAGTAGAGAATTCAATTTCAAGGGGTAATGCTCATTCAAAAGGGGAAAAAGTAGACTCTGAGAGTGTTTCTGTTTCTGGTTACTCTGATACAAATGATGTTGAAGATAGTACCCTAGAGAAGTCAAAAGCTTCACATTCTTCAGCTGATGGAATGAGAGAAGGCAAAACCACTAAGAAGCTGGCCATACCAGTTAGCGAGCATGTATATGGTGGAATGAGCAAGGCCGAGCTCTTAGAAGCCCAAGAGAAAGAGATTCAGTTGGCCCAACAGGACATAACCATGGAACAAACCAAAGAGAAGAAGAATGCCTTGGAGTCATATGTGTATGACATGCGAAATAAGATTCTAAACACCTATCAAAGTTTTGCTACTGATTGTGAGAAGGAAGGCATCTCTACAAGCCTACAGCAGACAGAGGATTGGCTATATGAGGATGGGGATGATGAAACTGAAAGTGCTTATATTTCAAGGCTGGAGGATCTTAAGAAGTTGCTAAATCCTATTGAGAACCGATATAAGGATGAAGAAGCAAGAGCACAAGCTACAAGGGATCTGTTAAAGCGCATTGCAGATTATCAGATGTCTGTAGATTCACTCTCACCAAAGGACCGGGAAATGATGATTGATGAGTGCAATAAAGCACAGCAGTGGCTAAGAGAGAAAACACAACTACAAGAATCCATGCCAAAGAACAATGACCCTGTCGTCTGGTCAACTGATATCAAGTGCAAGGAAGAGGATTTTGACACGGCATGCAAGCATATCTTGAGATCCAAGGCTTCTCATTAA 2283 41.04 MSVVGFDVGNENCVIAIAKQRGIDVLLNDESKRETPSMVCFGEKQRFLGSAGAASAMMNPKSTISQVKRLIGWSYMEPDIQKDLKMFPFETSEAPDGGILIHLKYLGETHSFTTVQIMGMLLGHLKDVTEKNVETPISDCVIGIPSYFTDIQRRAYLNAAAIAGLRPLRLMHDCTAIALSYGIYKNDLAIGGPTHVAFVDIGHCDTQVSIVSFEAGHMWVLSHTFDRNLGGRDFDEVLFSYFTAQFKEQYNIDVYSNIKACVRLHSACEKLKKVLSANAEAPLNIECLMDEKDVKGFIKREDFEKLSSGLLERITIPCRKALANAGLTVERIHSVELVGSGSRIPAINRLLTSLFGREPSRTLNASECVARGCALQCAMLSPTFRVREYEVQDTLPFSIGFSLDGGPISKGSDGVLFPRAQSFPSAKVLTFQRSNLFYLEAFYVNPDELPAGVPLKISYFTIGPLQGSHNEKSRVKIRVQLNLHGIVTIESATLIDDQVENSISRGNAHSKGEKVDSESVSVSGYSDTNDVEDSTLEKSKASHSSADGMREGKTTKKLAIPVSEHVYGGMSKAELLEAQEKEIQLAQQDITMEQTKEKKNALESYVYDMRNKILNTYQSFATDCEKEGISTSLQQTEDWLYEDGDDETESAYISRLEDLKKLLNPIENRYKDEEARAQATRDLLKRIADYQMSVDSLSPKDREMMIDECNKAQQWLREKTQLQESMPKNNDPVVWSTDIKCKEEDFDTACKHILRSKASH 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9398779 9404034 + Conep15aG0118900.1 Cone15ag1160 454288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1160 760 Coils Coil 576 598 - -
Cone15ag1160 760 CDD HSPA4_like_NDB 2 381 - -
Cone15ag1160 760 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 568 IPR029047 -
Cone15ag1160 760 PRINTS 70kDa heat shock protein signature 30 42 - -
Cone15ag1160 760 PRINTS 70kDa heat shock protein signature 363 383 - -
Cone15ag1160 760 PRINTS 70kDa heat shock protein signature 332 348 - -
Cone15ag1160 760 PRINTS 70kDa heat shock protein signature 388 407 - -
Cone15ag1160 760 PRINTS 70kDa heat shock protein signature 140 160 - -
Cone15ag1160 760 PRINTS 70kDa heat shock protein signature 2 15 - -
Cone15ag1160 760 Gene3D - 38 113 - -
Cone15ag1160 760 FunFam Heat shock 70 kDa protein 4 570 681 - -
Cone15ag1160 760 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 603 IPR029047 -
Cone15ag1160 760 Coils Coil 656 676 - -
Cone15ag1160 760 FunFam Heat shock 70 kDa protein 4 1 74 - -
Cone15ag1160 760 MobiDBLite consensus disorder prediction 531 552 - -
Cone15ag1160 760 FunFam Heat shock 70 kDa protein 4 102 196 - -
Cone15ag1160 760 MobiDBLite consensus disorder prediction 505 552 - -
Cone15ag1160 760 Pfam Hsp70 protein 3 670 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Cone15ag1160 760 FunFam Heat shock 70 kDa protein 4 38 113 - -
Cone15ag1160 760 Gene3D - 570 681 IPR029048 -
Cone15ag1160 760 FunFam Heat shock 70 kDa protein 4 230 313 - -
Cone15ag1160 760 SUPERFAMILY Actin-like ATPase domain 192 381 IPR043129 -
Cone15ag1160 760 Gene3D Actin; Chain A, domain 4 230 313 - -
Cone15ag1160 760 Gene3D - 186 360 - -
Cone15ag1160 760 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 572 670 IPR029048 -
Cone15ag1160 760 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Cone15ag1160 760 Gene3D - 5 374 - -
Cone15ag1160 760 PANTHER HSC70CB, ISOFORM G-RELATED 1 756 IPR050451 GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0006457(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1160 K09489 - - vvi:100250433 1105.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1160 Cone-Chr15:9398779 Cone20ag1226 Cone-Chr20:8137621 2.82E-272 dispersed
Cone14ag1142 Cone-Chr14:9469281 Cone15ag1160 Cone-Chr15:9398779 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g507 Blo03g00559 . Bda07g00360 . . . . . . . Cma01g01133 Cma09g00950 . Car09g00863 . Cpe06g00765 Cpe02g00768 . . . . . . . . . . . . . . . . Cone14ag1142 Cone15ag1160 Lsi04g01203 . . . . . . . Bpe11g00547 . . Bma14g00339 . Cmo01g01184 Cmo09g00948 . . . Car16g00544 . . . . . . . . . Cla05g01487 . Cec05g1613 . Clacu05g1583 Cmu05g1486 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004049 1 5 1 1 1 1 2 3 1 1 1 1 2 1 1 2 1 2 2 2 1 1 1 1 1 1 1 3 2 0 44