Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1164 ATGCTGGAGAGAGACTGCATCTCACTAAGGATCTGCTTGCTAGTTGTGAGAGCATTGAGTGGCAGGAAGGTGGATGAGTTGGACAAAGCTGTTGCTGTAGCAGCAAGAGATCCTGCTTGGTATGGGATTGACGAAGTGGAACTTGAAAAACGAAGGAGGTGGACAAGCACCGCTCGTACTCAGGTTGGAAATGTTAAGAAAGTGGTTGGTGCTGGTAAGGACTTGAGTGGTACTGGTACTACAAGTGCGAGTGGAATGCGCAGGGAGCTAATGAGACTGCCTAACACGAATCAAGGGGACCGGTCCCGCCAGTACTCTGATGACAATGATGATTTCATAGCATCCGAATCAGACCGACAAATGCTTCTCATAAAACAGCAGGATGAGGAGTTGGATGAGCTCAGTGCAAGTGTGCAGAGAATTGGAGGTGTTGGGCTTACTATACATGAAGAACTTCTAGCTCAGGATAAAATTATAGATGAATTAGGTATGGAATTGGAAAGTACATCAAACCGTCTCGATTTTGTTCAGAAAAAGGTCGGATTGTTGATGAAAAAGGCAGGTGCCAAGGGGCAGATAATGATGATATTGTTTTTGGTTGTTCTATTCATCATCCTATTTGTTTTGGTGTTCTTTACCTAA 642 44.39 MLERDCISLRICLLVVRALSGRKVDELDKAVAVAARDPAWYGIDEVELEKRRRWTSTARTQVGNVKKVVGAGKDLSGTGTTSASGMRRELMRLPNTNQGDRSRQYSDDNDDFIASESDRQMLLIKQQDEELDELSASVQRIGGVGLTIHEELLAQDKIIDELGMELESTSNRLDFVQKKVGLLMKKAGAKGQIMMILFLVVLFIILFVLVFFT 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9426505 9429857 - Conep15aG0119300.1 Cone15ag1164 454292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1164 213 SUPERFAMILY t-snare proteins 23 67 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cone15ag1164 213 Coils Coil 159 179 - -
Cone15ag1164 213 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 121 183 IPR000727 -
Cone15ag1164 213 FunFam syntaxin-61 isoform X1 124 185 - -
Cone15ag1164 213 SUPERFAMILY SNARE fusion complex 119 183 - -
Cone15ag1164 213 Gene3D - 123 184 - -
Cone15ag1164 213 SMART tSNARE_6 116 183 IPR000727 -
Cone15ag1164 213 Pfam SNARE domain 158 209 IPR000727 -
Cone15ag1164 213 ProSitePatterns Syntaxin / epimorphin family signature. 127 166 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cone15ag1164 213 PANTHER GOLGI SNARE BET1-RELATED 113 206 - -
Cone15ag1164 213 CDD SNARE_Qc 124 180 - -
Cone15ag1164 213 Pfam Syntaxin 6, N-terminal 23 66 IPR015260 GO:0016020(InterPro)|GO:0048193(InterPro)
Cone15ag1164 213 Gene3D - 17 71 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1146 Cone-Chr14:9492524 Cone15ag1164 Cone-Chr15:9426505 9.47E-113 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1164 K08500 - csv:101212527 264.618