Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1167 ATGGAGAATAGCTCCTTCAAGCTCGAACATCCCCTCGAAAGGAGGAAAGCAGAAGCTACTCGTATCAGGGAGAAGTATCCGGATAGAATTCCGGTCATTGTGGAGAAAGCTGAAAGAAGTTATATACCAGACATAGACAAGAAAAAATACCTTGTTCCTGCTGATTTGACAGTTGGGCAGTTTGTTTATGTTGTCCGTAAGAGGATAAAGCTTAGTGCAGAGAAAGCCATATTCATCTTTGTCAAGGACATTTTACCACCCACTGCTGCATTGATGTCTACAATCTATGAAGAAAACAAGGATGAGGATGGTTTTCTTTACATGACATACAGTGGTGAGAACACTTTCGGATAA 354 40.96 MENSSFKLEHPLERRKAEATRIREKYPDRIPVIVEKAERSYIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKDILPPTAALMSTIYEENKDEDGFLYMTYSGENTFG 117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9437400 9438872 + Conep15aG0119600.1 Cone15ag1167 454295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1167 117 SUPERFAMILY Ubiquitin-like 4 117 IPR029071 -
Cone15ag1167 117 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 4 117 IPR004241 GO:0006995(PANTHER)
Cone15ag1167 117 Gene3D - 1 117 - -
Cone15ag1167 117 FunFam Autophagy-related protein 1 117 - -
Cone15ag1167 117 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Cone15ag1167 117 CDD Ubl_ATG8 12 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1167 K08341 - - mdm:103428572 217.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1167 Cone-Chr15:9437400 Cone9ag1081 Cone-Chr9:6206981 2.31E-70 dispersed
Cone12ag1378 Cone-Chr12:10196512 Cone15ag1167 Cone-Chr15:9437400 9.56E-70 wgd
Cone15ag1167 Cone-Chr15:9437400 Cone6ag1094 Cone-Chr6:6737568 5.87E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g525 . . . . Bpe09g00171 . Bma10g00551 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1167 . . . . Blo07g00902 . Bda05g00718 Bda12g00912 . Bpe03g00790 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000267 6 8 5 7 6 4 7 4 4 5 4 4 5 5 5 6 4 9 4 3 5 4 4 3 2 2 4 9 8 5 151