Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1169 ATGGGCCAGATCGTAAAGAGGAAGAAGAAAGGCAGGCCATCCAAGGCAGATCTGGCTCGCCGGGCTGGAGAGTCGCCGCCGAAGTTCGAACCGGTCATGCGACGGAGTTTACGGCGCCGAAATGTGAGGTACAACATCGATATTGACGATTATATAGACGAGGACGAAGAAGAAGACGAAGAGGATGAGCGGAGGAGGTTGAAGAAGCTGAAGCTCGTGGTCAAGCTGAACCAAGTCAGAGATGGAGCTGAGCCGACGAATGGTCGAGCACGGACGAAGATGCGTGCGTCACACGCGCATGAGTATGGCGAGTCCGCTTCAGAAGAGGAGGATGATGAGTCCGAGAGGAGGCCATTGAAGAAGAGGATGATTGGCCGCAGTGGTGAAGAAGACGACGCGGAAGAAGAAGAAGAAGAACGAGCAGAAGAAGAAGATGATGACTACGATGACGAACATCGTGGTGAAGAGGATGGAGATGATGACGGTTTTGAGGAAAGGGGAGGAAGGAAGGTCGGCTCCAAAGGTTCCGACTCTGTTCCGGGAACACCATCCGATTCTCCAAATGGGACAATACCATTACCCGATAAGAGGACATTAGAGTTAATTCTCGACAAATTGCAGAAGAAAGACACATATGGTGTATATGCCGAACCAGTGGATCCTGAAGAGCTTCCGGATTATCATGATGTGATTGAGCATCCAATGGACTTTGCTACAGTGAGGAAGAAGTTGTCCGCTGGTGCCTACTCAACTTTGGAAGACTTTGAGAGTGATGTGTTCCTCATTTGCTCAAACGCAATGCAATATAATTCATCAGACACCATATATCATAAGCAGGCATTTGCAATACAAGAACTAGCAAGGAAGAAATTTGGAAGGTTAAGAACCAATTTTGAAAACTCTGAGAAAGAACTGAAGCTGGAGCAAAAAGTAAAACCCAATTTTTCCGACAAGAAGCAAACAAGGAGGCCATTGTGTAGGACCTCACAAGAACCCATTGGGTCCGATTTCTCCTCAGGTGCCACTCTTGCCACCACCATAGTTATACCGAACATTTCTAATGGAACGCCTTTGGGGGGTGGTTGTGAAAGACCAAACAACATTGATGGGTTCGTAGAGAGTAATTCTTCTCCATTTGATACCAACCTAGAGAAGACAGAGGAACAGTTATCAGGTAAAAGTTTCCTACCTAGATTAGGCAGGAAGGTGATCCTTGATGAAAACCGTCGATCAACATACAATACTTCCAATCAACCAGTTATCCAATCAGACTCGATATTTGCAACATTTGAGGGTGAAATTAGGCAACTTGTTGCGGTTGGGCTTCATGCTGAATATTCCTATGCACGGAGCCTGGCCCGCTTTTCTGCAACTTTGGGCCCTGTTGCTTGGAAAGTTGCCTCCAAGAGAATCGAGCAAGCCCTACCTTCTGGCTATAAATTCGGCCGTGGTTGGGTTGGAGAATACGAGCCACTCCCAACCCCGGTTTTGATGCTCGAAAACCATAACCAAAAGGAGACCAATTTATTTACCCACACTCCATCTCCTACTGAGTTGAAAAAGGATGATAAATCCGTAAAGAACCCTTTTCCTACCAAGAAAGATCATCTTCATCCAGTTAGTGGGCCAAATCCAGAATCAAGATCATCTTTATATAATTCCCCAAGGGGCCATACTTCAGATAGGAAACCACCCTTGTTTTCCTCTAATGGAACAAGATCCAATCCCCCAATTGATATACCTTCTAAGATTTTTACAGAGCCTGAGAAGATGAAAAAGCAAATCGAGTTAAACCTCTTGCCCTTGCCCAATCAGAATAGCCCACGTATGCCTTTTTCCAAATCCAATGATAGGCAGCCAACCATGAATTTCAATAAGCTGCCAGATTCTAATGGAGCTGTTATTACTACTACTACTACTACTACCACTACTAGAGGTTTGCCTAATGGTAAATTAGTCACTACCCCGTCTTCTAATAATGGTCCTAGTCACATTTTCCAAGAAAAACCTAGCTATCCCCATGGGCCGGAGCAAGGTAATGGTCTCTCTGACCCGGTTCAGTTAATGAGAATTTTAGCTGAAAAAGCTCAAAAGCAACAGCAAAAACCTTCAAACCAGTCTCCAATTGAAGCTCCTCATCCTCCTCCTCCGGTGGCACCTCAATTGATCTCACCAGCCCCACCACCAATGAGAAGGGATGATTCTGAAAATGCTGCAGCAGCAGCTGCCCGTGCATGGATGTCCATAGGAGCTGGAGGGCTCAAAAAAGGAACGGAAAATCACATTTCTGCAGATTCGCTATATAATCCAGCTAGAGAATTTCATCCTCAGAATACTCGTATATCTTCTTCATCTTCGGAAAATAAGAACAGTTTTCCATTACAGGCATATAATATACCACCACAGCCTACTCAGCCAACCCATTTGGAAAACCATAGACCAATGATCTTCCCTCATTTTGGCTCTTCTGCGGATTTGTCCAAGTTTCAGGTACAATCAACTTCTTCCCCTTCTTGGAGAGGGCTTAGCCCTCATACCCAGATGAGGCAGAAGCAAGATATGCTCCCTCCTGATTTGAATATCGGTTTTCAGTCACCTGGGTCTCCTCCTAGACAGTCTAATGGAGTTCTGGTTGATTCTCAGCAGCCGGACCTGGCTTTGCAACTTTGA 2670 45.58 MGQIVKRKKKGRPSKADLARRAGESPPKFEPVMRRSLRRRNVRYNIDIDDYIDEDEEEDEEDERRRLKKLKLVVKLNQVRDGAEPTNGRARTKMRASHAHEYGESASEEEDDESERRPLKKRMIGRSGEEDDAEEEEEERAEEEDDDYDDEHRGEEDGDDDGFEERGGRKVGSKGSDSVPGTPSDSPNGTIPLPDKRTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRKKLSAGAYSTLEDFESDVFLICSNAMQYNSSDTIYHKQAFAIQELARKKFGRLRTNFENSEKELKLEQKVKPNFSDKKQTRRPLCRTSQEPIGSDFSSGATLATTIVIPNISNGTPLGGGCERPNNIDGFVESNSSPFDTNLEKTEEQLSGKSFLPRLGRKVILDENRRSTYNTSNQPVIQSDSIFATFEGEIRQLVAVGLHAEYSYARSLARFSATLGPVAWKVASKRIEQALPSGYKFGRGWVGEYEPLPTPVLMLENHNQKETNLFTHTPSPTELKKDDKSVKNPFPTKKDHLHPVSGPNPESRSSLYNSPRGHTSDRKPPLFSSNGTRSNPPIDIPSKIFTEPEKMKKQIELNLLPLPNQNSPRMPFSKSNDRQPTMNFNKLPDSNGAVITTTTTTTTTRGLPNGKLVTTPSSNNGPSHIFQEKPSYPHGPEQGNGLSDPVQLMRILAEKAQKQQQKPSNQSPIEAPHPPPPVAPQLISPAPPPMRRDDSENAAAAAARAWMSIGAGGLKKGTENHISADSLYNPAREFHPQNTRISSSSSENKNSFPLQAYNIPPQPTQPTHLENHRPMIFPHFGSSADLSKFQVQSTSSPSWRGLSPHTQMRQKQDMLPPDLNIGFQSPGSPPRQSNGVLVDSQQPDLALQL 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9444959 9450065 - Conep15aG0119800.1 Cone15ag1169 454297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1169 889 Pfam Bromodomain 202 280 IPR001487 GO:0005515(InterPro)
Cone15ag1169 889 MobiDBLite consensus disorder prediction 865 889 - -
Cone15ag1169 889 MobiDBLite consensus disorder prediction 695 739 - -
Cone15ag1169 889 CDD Bromodomain 195 291 - -
Cone15ag1169 889 ProSiteProfiles Bromodomain profile. 207 277 IPR001487 GO:0005515(InterPro)
Cone15ag1169 889 MobiDBLite consensus disorder prediction 1 15 - -
Cone15ag1169 889 MobiDBLite consensus disorder prediction 827 889 - -
Cone15ag1169 889 MobiDBLite consensus disorder prediction 112 129 - -
Cone15ag1169 889 MobiDBLite consensus disorder prediction 827 850 - -
Cone15ag1169 889 Gene3D - 194 314 IPR036427 GO:0005515(InterPro)
Cone15ag1169 889 MobiDBLite consensus disorder prediction 1 30 - -
Cone15ag1169 889 SMART bromo_6 188 296 IPR001487 GO:0005515(InterPro)
Cone15ag1169 889 MobiDBLite consensus disorder prediction 640 683 - -
Cone15ag1169 889 MobiDBLite consensus disorder prediction 355 380 - -
Cone15ag1169 889 PRINTS Bromodomain signature 224 240 IPR001487 GO:0005515(InterPro)
Cone15ag1169 889 PRINTS Bromodomain signature 240 258 IPR001487 GO:0005515(InterPro)
Cone15ag1169 889 PRINTS Bromodomain signature 258 277 IPR001487 GO:0005515(InterPro)
Cone15ag1169 889 MobiDBLite consensus disorder prediction 47 66 - -
Cone15ag1169 889 MobiDBLite consensus disorder prediction 130 162 - -
Cone15ag1169 889 MobiDBLite consensus disorder prediction 543 579 - -
Cone15ag1169 889 MobiDBLite consensus disorder prediction 177 191 - -
Cone15ag1169 889 MobiDBLite consensus disorder prediction 74 196 - -
Cone15ag1169 889 Coils Coil 126 146 - -
Cone15ag1169 889 PANTHER BROMODOMAIN CONTAINING PROTEIN 6 888 IPR051831 -
Cone15ag1169 889 MobiDBLite consensus disorder prediction 640 666 - -
Cone15ag1169 889 SUPERFAMILY Bromodomain 176 296 IPR036427 GO:0005515(InterPro)
Cone15ag1169 889 MobiDBLite consensus disorder prediction 708 727 - -
Cone15ag1169 889 ProSitePatterns Bromodomain signature. 213 269 IPR018359 -
Cone15ag1169 889 MobiDBLite consensus disorder prediction 16 30 - -
Cone15ag1169 889 MobiDBLite consensus disorder prediction 508 580 - -
Cone15ag1169 889 MobiDBLite consensus disorder prediction 516 534 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1169 K22184 - - csv:101204699 787.719
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1169 Cone-Chr15:9444959 Cone3ag1249 Cone-Chr3:31304612 6.95E-77 dispersed
Cone14ag1152 Cone-Chr14:9522833 Cone15ag1169 Cone-Chr15:9444959 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g527 . . . . Bpe09g00169 . . . . . Cma01g01124 . Car01g00998 Car09g00874 Sed04g3216 Cpe06g00774 Cpe02g00777 Bhi09g01656 Tan01g4563 Cmetu01g2650 . Hepe01g1265 Mch11g1197 . . . . . . . . . . Cone14ag1152 Cone15ag1169 Lsi02g01898 Csa07g01101 . . Blo07g00901 . Bda05g00716 Bda12g00914 . Bpe03g00789 . . . Cmo01g01175 Cmo09g00956 . . . . . . . . . . . . . Cla09g01015 Cam09g1072 Cec09g1072 Cco09g1090 . . Cre09g1036 . . . Cme01g01024
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005656 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39