Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1182 ATGGAGTCGAACAATAGTACTAAGGAGGCAAGTCGTATACTTCAAGAGCTCGAAACCTTGAAGTCAACCAAGTCCGACATAGAGCGGAAGATCTCAGCTCTCGAAACTCAGCTCCGCGAGATTGATCTTCGGAAGAACGGCGTTTCTAACGGCTCCGTCAATCCAGCCTCTTCCGACGGTTCTGCATTTCCCAACGGTTTGTCCCCTCAGGATATTTACAGATACAGTCGCCACCTCTTGCTCCCTTCCTTTGGCGTCAAAGGGCAATCGAAGCTTTTGAATTCTTCGATTTTAGTGATTGGAGCAGGTGGACTCGGGTCGCCGGCTCTATTATATCTTGCAGCTTGTGGTGTTGGTCGTTTGGGTATGGTCGATCATGATGTTGTTGAGCTTAACAACATGCACCGACAGATTATTCATACTGAAGCTTATATTGGTCAATCAAAAGTGAAATCGGCAGCAGCGACCTGTCACTCGATCAACTCTACCATTCAGATTGTTGAACACAAAGAAGCTCTACGGACATCAAATGCTTTAGAGATTTTGAGCAAATATGATATCATAGTGGATGCAACAGATAACGCTCCCAGCCGCTATATGATTAGTGATTGCTGTGTGGTGTTAGGAAAGCCTCTTGTCTCTGGTGCAGCTCTGGGAATGGAGGGGCAGCTCACAGTATACAACTACAAAGGGGGCCCATGCTATCGATGCCTATTTCCAACTCCGCCACCCACAACAGCATGTCAAAGATGTGCTGATAGTGGTGTCTTAGGAGTAGTTCCCGGTATCATTGGCTGCCTCCAAGCCCTGGAGGCTATTAAAATAGCAGGTGAAGTTGGTGAACCACTCTCTGGAAGGATGCTTTTGTTCGATGCATTATCAGCACGGATTCGTATTGTCAAGATTCGAGGAAGGTCATTACAATGCAAAGTTTGTGGGGACAAATCTACATTCACTGCACAGAAATTTCAAGAATTTGATTATGAGAAGTTCACTCAATCTCCACTATCACCGTCACCGTTGAAGTTAAAGCTACTCGAGGCAGAATCAAGAATAACCAGCAAAGAGTACAACGAGAGAATTAACAACGGCCAAGCTCATATATTGGTGGATGTCCGTCCTGAGCACCACTTCAAGATTGTTTCTCTTCCCAATTCCATAAACGTTCCTCTGGCAAGTTTGGAAACTAGGCTGCCCGAAATATCTTCAGCTTTGAAGGAAGAAGAAGCGCGATCAGGCTTCGATTCCGATTATGAAGCACAGCTATATGTTATATGTAGGAGAGGGAATGATTCTCAGAGGGCTGTTCAGTATCTCCAGAAGTTGGGTTTCTCTTCAGCCAAAGATATTATTGGTGGGTTAGAAGGCTGGGCGAAGGATGTTGACCCAGGCTTCCCTACATACTAG 1407 45.63 MESNNSTKEASRILQELETLKSTKSDIERKISALETQLREIDLRKNGVSNGSVNPASSDGSAFPNGLSPQDIYRYSRHLLLPSFGVKGQSKLLNSSILVIGAGGLGSPALLYLAACGVGRLGMVDHDVVELNNMHRQIIHTEAYIGQSKVKSAAATCHSINSTIQIVEHKEALRTSNALEILSKYDIIVDATDNAPSRYMISDCCVVLGKPLVSGAALGMEGQLTVYNYKGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKIAGEVGEPLSGRMLLFDALSARIRIVKIRGRSLQCKVCGDKSTFTAQKFQEFDYEKFTQSPLSPSPLKLKLLEAESRITSKEYNERINNGQAHILVDVRPEHHFKIVSLPNSINVPLASLETRLPEISSALKEEEARSGFDSDYEAQLYVICRRGNDSQRAVQYLQKLGFSSAKDIIGGLEGWAKDVDPGFPTY 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9515931 9519385 - Conep15aG0121100.1 Cone15ag1182 454310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1182 468 SMART rhod_4 353 463 IPR001763 -
Cone15ag1182 468 Hamap Adenylyltransferase and sulfurtransferase MOCS3 [MOCS3]. 34 468 IPR028885 GO:0002143(InterPro)|GO:0005829(InterPro)|GO:0016783(InterPro)|GO:0070566(InterPro)
Cone15ag1182 468 ProSiteProfiles Rhodanese domain profile. 363 466 IPR001763 -
Cone15ag1182 468 FunFam Adenylyltransferase and sulfurtransferase MOCS3 68 317 - -
Cone15ag1182 468 Pfam ThiF family 75 311 IPR000594 -
Cone15ag1182 468 Coils Coil 10 44 - -
Cone15ag1182 468 Gene3D - 350 468 IPR036873 -
Cone15ag1182 468 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 61 336 IPR045886 GO:0004792(PANTHER)|GO:0005737(PANTHER)|GO:0016779(PANTHER)|GO:0042292(PANTHER)
Cone15ag1182 468 Pfam Rhodanese-like domain 355 459 IPR001763 -
Cone15ag1182 468 Gene3D - 68 319 - -
Cone15ag1182 468 FunFam Adenylyltransferase and sulfurtransferase MOCS3 350 468 - -
Cone15ag1182 468 Coils Coil 391 411 - -
Cone15ag1182 468 CDD RHOD_ThiF 343 468 - -
Cone15ag1182 468 CDD ThiF_MoeB_HesA_family 74 302 - -
Cone15ag1182 468 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 66 435 IPR035985 GO:0008641(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1182 K11996 - - cit:102616193 720.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1164 Cone-Chr14:9589865 Cone15ag1182 Cone-Chr15:9515931 5.52e-318 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g557 . . . . Bpe09g00160 . . Bma13g01072 Cmo16g00940 . . . . . . . . . . . . . . . Cla10g00489 Cam10g0478 Cec10g0498 Cco10g0484 Clacu10g0497 Cmu10g1324 Cre10g0730 . . . Cone15ag1182 . . . Cme06g02850 . Blo10g00844 . Bda12g00925 . . . . . . . . Cma16g00905 . Car16g00880 Cpe14g00720 . . . . . . . . . . . . . . . Lsi05g00576 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone3ag1496 . 62 378 Sulfurtransferasese/Rhodanese AT1G79230 78.5 1.7e-152 536.2
Cone10ag1429 . 1 317 Sulfurtransferasese/Rhodanese AT1G79230 78.2 2.8e-152 535.4
Cone10ag1429 . 1 265 Sulfurtransferasese/Rhodanese AT1G16460 75.8 9.2e-117 417.2
Cone3ag1496 . 62 326 Sulfurtransferasese/Rhodanese AT1G16460 75.5 2.7e-116 415.6
Cone16ag0271 . 36 308 Sulfurtransferasese/Rhodanese AT5G23060 62.5 2.7e-91 332.8
Cone2ag0695 . 31 308 Sulfurtransferasese/Rhodanese AT5G23060 59.6 1.4e-84 310.5
Cone11ag0483 . 1 463 Sulfurtransferasese/Rhodanese AT4G01050 56.8 2.9e-119 426.4
Cone18ag1021 . 1 465 Sulfurtransferasese/Rhodanese AT4G01050 55.5 1.9e-118 423.7
Cone1ag1559 . 3 611 Sulfurtransferasese/Rhodanese AT1G09280 64.4 1.8e-226 782.7
Cone1ag1609 . 80 445 Sulfurtransferasese/Rhodanese AT2G40760 74.9 1.2e-159 560.5
Cone5ag0131 . 38 213 Sulfurtransferasese/Rhodanese AT2G40760 64.6 3.7e-60 229.9
Cone5ag0130 . 20 163 Sulfurtransferasese/Rhodanese AT2G40760 77.8 1.1e-59 228.4
Cone19ag0374 . 5 312 Sulfurtransferasese/Rhodanese AT1G17850 66.0 3.8e-123 439.1
Cone13ag0545 . 4 228 Sulfurtransferasese/Rhodanese AT2G42220 69.3 4.4e-86 315.1
Cone19ag1395 . 28 150 Sulfurtransferasese/Rhodanese AT3G08920 63.4 8.4e-44 174.5
Cone16ag0063 . 1 236 Sulfurtransferasese/Rhodanese AT4G24750 75.8 1.1e-105 380.6
Cone1ag0466 . 8 303 Sulfurtransferasese/Rhodanese AT5G19370 56.6 1.9e-86 316.6
Cone14ag1164 . 118 467 Sulfurtransferasese/Rhodanese AT5G55130 74.4 1.1e-152 537.0
Cone15ag1182 . 118 468 Sulfurtransferasese/Rhodanese AT5G55130 73.6 4.5e-151 531.6
Cone15ag0001 . 59 239 Sulfurtransferasese/Rhodanese AT4G27700 78.7 2.5e-78 289.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009966 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 31