Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1186 ATGAAGAGAGGAAGAGGAGCCACTGGTTCCAGACCGGCGGCGGAGGCGGCTGTGACATCCGCCGGTGCAGCTCCAGGGCAGGTAACCGAACCTATAATCGGATCGGGATCGAGGAATGATTTAGCGAAAGATCCTAAATACCGCGGGGTTCGTAAAAGACCCTGGGGCAGATTCGCCGCCGAGATCAGAGACCCGTGGAAGAAAACTAGGGTTTGGCTCGGTACCTTTGATTCGGCGGAGGAGGCGGCGCGTGCGTACGATGCTGCAGCTCGATCTCTCCGTGGTCCAAAGGCGAAGACCAATTTACCGATTTCTAACCCAGCTTTTTTCAATCTTCCTCACCATCAACATCATCAACACCACAAGAACAACGCGATCAACGATCAAGATCCGTTTAGGGATCACAGGTTATATGGTGCAAATGGGTTCGAGGAGCAGCAGATTATAATACCGCAAAGACCTACCTCAAGCAGCTTGAGCTCAACCGTCGAGTCATTCAGTGGTCCGAGACCGCCGTCGGTGACTCTACTGCCTTCGTCGACGACTCAGCGACGGTTTCCACGTACTCCGCCGGTGGTGCCGGAGGATTGCCACAGCGACTGTGACTCCTCATCTTCCGTAATCGTCGATGATGGTGATATTACTTCCTCCTCAATGAGCCGTAAACAGCCTCTGCCTTTCGATCTTAACTTCCCGCCGTTGGATGTGGTTATCAACTTCGCCGGCGTTGATGAGCGCCGATGTACCGCTTTGCGCCTCTGA 762 54.07 MKRGRGATGSRPAAEAAVTSAGAAPGQVTEPIIGSGSRNDLAKDPKYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEEAARAYDAAARSLRGPKAKTNLPISNPAFFNLPHHQHHQHHKNNAINDQDPFRDHRLYGANGFEEQQIIIPQRPTSSSLSSTVESFSGPRPPSVTLLPSSTTQRRFPRTPPVVPEDCHSDCDSSSSVIVDDGDITSSSMSRKQPLPFDLNFPPLDVVINFAGVDERRCTALRL 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9539276 9540735 + Conep15aG0121500.1 Cone15ag1186 454314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1186 253 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 216 - -
Cone15ag1186 253 FunFam Ethylene-responsive transcription factor 2 46 104 - -
Cone15ag1186 253 CDD AP2 45 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone15ag1186 253 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone15ag1186 253 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone15ag1186 253 MobiDBLite consensus disorder prediction 153 187 - -
Cone15ag1186 253 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone15ag1186 253 MobiDBLite consensus disorder prediction 1 45 - -
Cone15ag1186 253 MobiDBLite consensus disorder prediction 153 205 - -
Cone15ag1186 253 SMART rav1_2 46 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone15ag1186 253 Pfam AP2 domain 45 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone15ag1186 253 SUPERFAMILY DNA-binding domain 46 105 IPR016177 GO:0003677(InterPro)
Cone15ag1186 253 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1186 Cone-Chr15:9539276 Cone8ag1554 Cone-Chr8:11648898 4.23E-60 dispersed
Cone14ag1170 Cone-Chr14:9624721 Cone15ag1186 Cone-Chr15:9539276 1.18E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44905 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1186 K09286 - cit:102613950 240.35