Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1195 ATGGCTGTGACAGATGCACAAAATCCTCTTCAGGGAGAACCAACTAATTGCGGTTCCTTACTGCAGAAATTGCAAGAAATTTGGGATGAGGTCGGTGAGAGTGATGAGGAACGAGATAAAATGCTGCTTCAGATAGATCAAGAGTGCTTGGATGTATACAAGAGAAAAGTCGAGCTAGCTGCAAAGTCCAGGGCACAGCTTCTTCAAACATTATCAGATGCCAAAATCGAACTTTGCACTCTCCTATCAGCCCTTGGGGATAAAAGCTTTGTTGGAACTCCTGGGAAGACTTCTGGCACAATCAAGGAGCAGCTAGAAGCTATATCACCGACACTTGAACAATTGTGGAGTCAGAAAGAAGAGAGAGTGAAGGAATTTTCTGATGTGCAATCTCAGATTCAGAAGATATGTGGTGAGATTGCTGGGAATCTGAAGCTTAGTGAGGTTCCTGAAGTTGACCAATCTGACCTGTCCTTGAAAAAGCTTGATGAATTTCAGGCTCAACTTCAAGAACTTCAGAAGGAAAAGAGTGATAGATTGCAAAAAGTGCTTGAGTTTGTGAGCACGGTTCACGATCTATGTGCTGTTCTTGGAATGGATTTCTTCACCACTGTTACTGAAGTTCATCCGAGCTTGAATGACTCAACGGGTATGCAATCCAAAAGCATTAGCAACAGTACTTTATCAAGGCTTGCAAAGACAGTCTTCACTCTTAAGGAAGACAAGAAGCATAGGCTGCAAAAGCTTCAAGAATTAGCAACTCAGCTAATTGATCTCTGGGATTTGATGGATACACCCATAGATGAAAGACAATTTTTTGATCATGTCACATGTAATATATCGGCTTCAGTTGATGAAGTAACAGTTCCAGGAGCTCTTGCTCTGGATTTAATAGAACAGGCTGAGGTGGAGGTTGAAAGGCTTGACCAGCTTAAAGCCAGTAGGATGAAGGAAATTGCTTTCAAGAAGCAAACTGAACTTGAAGAGATATTCACTCGGGCCCACATAGAAATAGACCCAGAGGCTGCTCGAGAAAAGATAATGGACTTGATTAATGCCGGAAATGTGGAGCCGGCAGAGTTACTGGCTGACATGGATAATCAGATAGCAAAAGCCAAAGAAGAAGCGCTTAGCAGAAAAGATATATTGGATAAGGTTGAAAAGTGGATGTCTGCTTGTGAAGAAGAGAGCTGGCTCGAAGACTACAATCGGGATGAAAATAGGTACAATGCAAGTAGAGGAGCTCATTTGAACCTCAAACGTGCAGAAAAGGCCAGAATTCTGGTCAACAAGATTCCTGTTCTGGTTGAAACATTGGTTACAAAAACTCGAGTATGGGAAGAAGAACATGGCATAACATTTACATATGATGGTGTTCCTCTCCTTGCCATGCTGGATGAATATGCCATGCTTAGGCACGAAAGGGAAGAAGAAAAACGAAGAATGAGGGATCAGAAAAAGTTCCCACATGTGGAGCCAAACACAGAGCAAGAATTAGCTTTGAGTTCAAAGCACAGCCCGGCTCGGCCTGTTGGCCCAAAGAAGTTAGCAAGCCCACGTGGCAATGGTGCCAGAATCGGAACTCCTACCAGACGCTTATCTCTAAATCAAAACGGAGCTAAGTCAGCTTCACGGGACGGAAGGAGGGATAGCAATACAAGGCCTGTGGCCCCCACAAACTATGTAGCCATTTCAAAAGAGGAGGCAGACTCTCACAGTTCCAGTACTGACCCAGTTTCTACTTGA 1746 43.59 MAVTDAQNPLQGEPTNCGSLLQKLQEIWDEVGESDEERDKMLLQIDQECLDVYKRKVELAAKSRAQLLQTLSDAKIELCTLLSALGDKSFVGTPGKTSGTIKEQLEAISPTLEQLWSQKEERVKEFSDVQSQIQKICGEIAGNLKLSEVPEVDQSDLSLKKLDEFQAQLQELQKEKSDRLQKVLEFVSTVHDLCAVLGMDFFTTVTEVHPSLNDSTGMQSKSISNSTLSRLAKTVFTLKEDKKHRLQKLQELATQLIDLWDLMDTPIDERQFFDHVTCNISASVDEVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKKQTELEEIFTRAHIEIDPEAAREKIMDLINAGNVEPAELLADMDNQIAKAKEEALSRKDILDKVEKWMSACEEESWLEDYNRDENRYNASRGAHLNLKRAEKARILVNKIPVLVETLVTKTRVWEEEHGITFTYDGVPLLAMLDEYAMLRHEREEEKRRMRDQKKFPHVEPNTEQELALSSKHSPARPVGPKKLASPRGNGARIGTPTRRLSLNQNGAKSASRDGRRDSNTRPVAPTNYVAISKEEADSHSSSTDPVST 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9565502 9569208 + Conep15aG0122400.1 Cone15ag1195 454323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1195 581 MobiDBLite consensus disorder prediction 566 581 - -
Cone15ag1195 581 MobiDBLite consensus disorder prediction 476 581 - -
Cone15ag1195 581 Coils Coil 239 259 - -
Cone15ag1195 581 Gene3D - 151 209 - -
Cone15ag1195 581 Gene3D - 368 503 - -
Cone15ag1195 581 Coils Coil 298 318 - -
Cone15ag1195 581 FunFam 65-kDa microtubule-associated protein 6 369 503 - -
Cone15ag1195 581 Coils Coil 461 481 - -
Cone15ag1195 581 Coils Coil 155 182 - -
Cone15ag1195 581 MobiDBLite consensus disorder prediction 476 493 - -
Cone15ag1195 581 Pfam Microtubule associated protein (MAP65/ASE1 family) 19 516 - -
Cone15ag1195 581 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 7 566 IPR007145 GO:0000226(InterPro)|GO:0000226(PANTHER)|GO:0000911(PANTHER)|GO:0005737(PANTHER)|GO:0005819(PANTHER)|GO:0008017(PANTHER)|GO:0008017(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1195 K16732 - - vvi:100267550 925.235
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0461 Cone-Chr13:5042904 Cone15ag1195 Cone-Chr15:9565502 5.66E-154 dispersed
Cone15ag1195 Cone-Chr15:9565502 Cone5ag0464 Cone-Chr5:1962778 1.47E-169 dispersed
Cone5ag1662 Cone-Chr5:11805925 Cone15ag1195 Cone-Chr15:9565502 1.84E-27 transposed
Cone14ag1180 Cone-Chr14:9654796 Cone15ag1195 Cone-Chr15:9565502 0 wgd
Cone15ag1195 Cone-Chr15:9565502 Cone9ag0051 Cone-Chr9:258253 5.14E-293 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g575 . . Bda07g00378 Bda09g00408 Bpe09g00151 Bpe08g01113 . Bma13g01085 . Cmo06g00891 . . . . . . . . . . . . . . Cla10g00472 Cam10g0460 Cec10g0481 Cco10g0469 Clacu10g0479 Cmu10g1308 Cre10g0713 . Cone9ag0051 Cone14ag1180 Cone15ag1195 . Csa03g00474 . Cme06g02836 Blo07g00883 . . . . . Bma07g01285 Bma14g00324 Sed08g2977 . . . . . . . . Bhi11g00574 Tan01g1748 Cmetu06g2464 . . . . . . . . . . . Lsi05g00562 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003979 3 1 2 4 2 1 2 1 1 1 1 1 1 1 1 2 1 3 1 1 1 1 1 1 1 1 1 3 2 1 44