Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1199 ATGGAGCCAGTGGCGAATCTTGAAGCTAGGGAGTCGAGCGAGCCTCAATTAGGCGAGAAGAGGCATGCTAAGAATGGAGGAGGGGATGATGAATTTGTTGAGAAAGCGTCGAGCAAGAAGGCTAGGTTCAGCGCTGGAGCCGGTCGTGATCTGAAGAGAGTTGCGGAGATCGTGTTGGTGTTGTCGACGATGGCTAATATGCGCGGAGGGAAGAAGCCGACGGATGTTGAGGTTGAATTGATGGCGGAGGCGAGGGATAAGCTGGTGGAGATGTGTGAAGGATTAGCTCCGAAGGAGATTGTGGGAAGAGATGGGATTGGAGCTGTGATTGAGGATTTGGGGCTTAATGGTAAGGTTAAGGATCAGAGGTTAGGGTTTCGAGGTCCCATGTTGACTATAGCGGAGAAGTTGTCTCTGTCAAAGAGGAAGATGGAAGAATCCAAGAAGTTTGTCGCACCACCTCCAGCAGCTTACAATCCCCATCCATTGCACCCAAACTCAAGTGCTGTATCTGAAAACCGTAGTCCAGCAGCACCTTTGGCTCGTATGTTTACGTCATCAGAGAAACTTGGTCATTTGCAGGGTCTTTCTTTGCCTCAAGATACAACTTCTACCTCTGTACAACTTCATCTTCCAGCCAGTGAAGTAAGGGCACCACACGTAGCTTCTGGTGGGTTTACTGTGAATCATTACGGAAGGGAGTCTACCTCTGCATTTCCAAAAGCTGAAAGAGCTCCCAATGGGATTTATCCACCTCAAATGCTAGGAAATTCTTCTGCAAATCACCCACTGGTCAATGCTCCTGCTTGGTCCATACAAAATCAATCTTCTTCGTTAGGTAAAACCTCTGTCAATGCTCAAGGAACAATAGATACGAGCATACCAAGAGTGACTCCTCAAGCAGCAACAGATCAGAGTTTTACGCCAGGTATCACTCAAACAGTGACCGGAATTATACCTGGTTCGCATCAGCCTTTGCAGAACATGAGCTTCGCTCAAGCTCCTTCACTTCCTCCTGGTAACCATATTGAAATTGCAAGAGTTGTTCAGAAATTGCTTCAGCCACAGCTTCCTGATCATCCCACCTGGACTCCTCCATCAAGGGATTACATGAATAAGGCAGTGACTTGCCAAAGTTGTCAGTTTACTGTTAATGAGGTTGATACTGTCCTTATTTGTGATGCTTGTGAGAAGGGATTTCACTTGAAATGTGTTCAGTCACCTAACCAGAGAGCAATCCCTAGAGGTGAGTGGCACTGTTCAAGGTGTTTGGCTTTAAGCAATGGGAAGCCTTTGCCCCCTAAATATGGCCGGGTCATGAGGAGTAATCCACCATTGAAAGTACCTTCTAACCCTACTGGAGTTCAGCTATCATCCGAGAAGAAAGTTGAAACAATGGAGTCAAAGGCCAGTCAACAGCAAACAACACCTAATGGGGGCTCTGATTTGCAAAGTCCTGTTCAAACTCAGACTGGAAGTTTTGGAAGCAATTATGCTGCGTCAGTGTTGGATTCTGAGACTTCAAATGTAAAACAAATGCATGGTAATAGTTTGTCTGCAAAACATGAAAATGTGGATTATGCTTCCCTGAGTACCCAAACCAAATCCTTGCCATCACCAGCTTCTGGTTATACTTGTGTTGGCTTATCAAATGACAGATCTGCTCAGGAAATTACAAATTCTGAATTACCTACTAAGAAAGGGAACCTTCCTGAACTTAATCCAGAGGCTTCTTCTAAATCAGTTGACATGATCAATAGTAAGCCTGACATGCTTAGCCAACCAGGTGGGCCCCAGATTGTTGATAGGCCAGGGCTGCCTAACATTTCAGAAAGTCCATCAGAGAAATGTAATGACAGCGACCTTACAGTTCAAGATGCAGAGAAAGCTCATCTAGAAGGTTGTTCTTACAGAGCTGTAGGACATGAGATTAAGCAAGCTGACCGAGAAGTTGCACAGATGAATGTTGACAAGGGTCTTGATGAGAAACCACGTTGTTCTGACAGAACTTTGGAACGTGAACATGATATTAAGCAAGATGGCCAGGAAGTCACACAGATAAGTGTTTATCAGGGTCTTGAAGAGAAATCCGATCAAGAAGGTTATCCTGACAGAAATTTGCGACATGATAATAAGCAAGATGGCCAAGAAATGTCACAATTAAATGTTGATCAGAGTCTTCAGGAGAAACTGTGTCAAGAAGTCTGTCCTGACAAAGCCTTGGGACATGATCTCAAGAAAGATGACCAAGAAATATCGCAGATGAATGTTGATCAGAGTCTTGAAGAGAGACCCCATCTAGAAGGTTCTTCTGATAGAACTATGGAATATGATATTAACCAAGATGACCAAGAAATCACAGAGGTGAATGTTGATCAGAATCTTGAAGAGAAATTGCATCTAGAAGGCTGTTCTGACAGAAAGTTGGGTCATGAAAATAAGCAAGATGACCAAGAATTAACTCAGAAGAATGTCAATCAGAGTATTGAAGAGAAATCCCATCTGGAAGCTTATTCTAACAGAGATTTGGAACATGATAATAATCAAGATGACCAAGAAGATGCAAATGTTTATCTGAGTGTAGTAAAGAAATCACATCCAGAAGGTTCTTCTGACAGAGCTTTGGGACCTGATAATAAGCAAGATGACCAAGAACTCACACAGTTGAATGTTGATCAGAGTCTTGAAGAGAAACCACATCAAGAGGGCCGTTCTGACAGAACTTTGGGACATGATAATAAACAAGATGACCAAGAAATGTCACAATTGAATGTTGATTGGAGTCTTGAAGAGAACCTGTGTCAAGAAGACTATCCTGACAGAACTTTGGGACATGATCTCAAGAAAGATGACCAAGAAATGTCGCACATGAATGCTTATCAGAGTGCTGAAGAGAGACCCCATCTAGAAGGTTCTCCTGATAGAACTATGGAACATGATATTAAGCAAGACGACCAAGAAATCACACAGATGAATGTTGATCAGAGCCTTGAAGATAATTCCCAAGAAGGCTGTTCTGACAGAAATGTGGAACATGATGTTAAGCAAGATGACCGAGAAATTGTGGATGTGGATGTTGATCAGAGCCTTGAAACTAGTTCTTCAGATGGCTTGCATGATGTTGAATGGGTTGGCAGAGTTATTCAAGTTGACGAGGGGAAATCATTTTATCAGTCATGTTGTGTTGATGGAGTAACTTATAGACTTCAGGATCATGCTCTTTTTTATTCAAATCATGGGAAATTGACACCTTCAAAGCTTCAGTCCATGTGGGAGGATAGTGGAACTGGGGCTAAGTGGGTTAGTATTATCAGGTACTACTTTCCTAGTGACCTTCTGGAATATTTTGGTTGTCCATCCTTACCTGATTGCAATGAGGTATATGAATCCAATCAAAATAGCACTGTAATGGCTGGCTTCATCCGAGGCCTCTGTGAAGTTTTTCCCACTGGGAAATTCGAGGAAGAGTGTGGAAGGCGAGATCAATTATTGCCCGATGCCAGTAATGGATTGCCCCCAATTTTCCTATGCAACTGGTTCTACGATGAATCTAAGGGGCAGTTTGAACAACTGTCCAGTTAG 3582 43.16 MEPVANLEARESSEPQLGEKRHAKNGGGDDEFVEKASSKKARFSAGAGRDLKRVAEIVLVLSTMANMRGGKKPTDVEVELMAEARDKLVEMCEGLAPKEIVGRDGIGAVIEDLGLNGKVKDQRLGFRGPMLTIAEKLSLSKRKMEESKKFVAPPPAAYNPHPLHPNSSAVSENRSPAAPLARMFTSSEKLGHLQGLSLPQDTTSTSVQLHLPASEVRAPHVASGGFTVNHYGRESTSAFPKAERAPNGIYPPQMLGNSSANHPLVNAPAWSIQNQSSSLGKTSVNAQGTIDTSIPRVTPQAATDQSFTPGITQTVTGIIPGSHQPLQNMSFAQAPSLPPGNHIEIARVVQKLLQPQLPDHPTWTPPSRDYMNKAVTCQSCQFTVNEVDTVLICDACEKGFHLKCVQSPNQRAIPRGEWHCSRCLALSNGKPLPPKYGRVMRSNPPLKVPSNPTGVQLSSEKKVETMESKASQQQTTPNGGSDLQSPVQTQTGSFGSNYAASVLDSETSNVKQMHGNSLSAKHENVDYASLSTQTKSLPSPASGYTCVGLSNDRSAQEITNSELPTKKGNLPELNPEASSKSVDMINSKPDMLSQPGGPQIVDRPGLPNISESPSEKCNDSDLTVQDAEKAHLEGCSYRAVGHEIKQADREVAQMNVDKGLDEKPRCSDRTLEREHDIKQDGQEVTQISVYQGLEEKSDQEGYPDRNLRHDNKQDGQEMSQLNVDQSLQEKLCQEVCPDKALGHDLKKDDQEISQMNVDQSLEERPHLEGSSDRTMEYDINQDDQEITEVNVDQNLEEKLHLEGCSDRKLGHENKQDDQELTQKNVNQSIEEKSHLEAYSNRDLEHDNNQDDQEDANVYLSVVKKSHPEGSSDRALGPDNKQDDQELTQLNVDQSLEEKPHQEGRSDRTLGHDNKQDDQEMSQLNVDWSLEENLCQEDYPDRTLGHDLKKDDQEMSHMNAYQSAEERPHLEGSPDRTMEHDIKQDDQEITQMNVDQSLEDNSQEGCSDRNVEHDVKQDDREIVDVDVDQSLETSSSDGLHDVEWVGRVIQVDEGKSFYQSCCVDGVTYRLQDHALFYSNHGKLTPSKLQSMWEDSGTGAKWVSIIRYYFPSDLLEYFGCPSLPDCNEVYESNQNSTVMAGFIRGLCEVFPTGKFEEECGRRDQLLPDASNGLPPIFLCNWFYDESKGQFEQLSS 1193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9576792 9581834 - Conep15aG0122800.1 Cone15ag1199 454327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1199 1193 MobiDBLite consensus disorder prediction 441 494 - -
Cone15ag1199 1193 Pfam BAH domain 1086 1191 IPR001025 GO:0003682(InterPro)
Cone15ag1199 1193 ProSiteProfiles BAH domain profile. 1065 1192 IPR001025 GO:0003682(InterPro)
Cone15ag1199 1193 MobiDBLite consensus disorder prediction 891 919 - -
Cone15ag1199 1193 MobiDBLite consensus disorder prediction 152 173 - -
Cone15ag1199 1193 MobiDBLite consensus disorder prediction 655 681 - -
Cone15ag1199 1193 MobiDBLite consensus disorder prediction 13 38 - -
Cone15ag1199 1193 SMART BAH_4 1065 1192 IPR001025 GO:0003682(InterPro)
Cone15ag1199 1193 MobiDBLite consensus disorder prediction 468 494 - -
Cone15ag1199 1193 MobiDBLite consensus disorder prediction 1 44 - -
Cone15ag1199 1193 MobiDBLite consensus disorder prediction 446 461 - -
Cone15ag1199 1193 MobiDBLite consensus disorder prediction 697 715 - -
Cone15ag1199 1193 CDD BAH 1064 1192 - -
Cone15ag1199 1193 ProSitePatterns Zinc finger PHD-type signature. 377 423 IPR019786 -
Cone15ag1199 1193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 366 437 IPR013083 -
Cone15ag1199 1193 MobiDBLite consensus disorder prediction 560 581 - -
Cone15ag1199 1193 MobiDBLite consensus disorder prediction 895 919 - -
Cone15ag1199 1193 Gene3D - 1036 1193 IPR043151 -
Cone15ag1199 1193 MobiDBLite consensus disorder prediction 655 720 - -
Cone15ag1199 1193 Pfam PHD-finger 377 423 IPR019787 -
Cone15ag1199 1193 ProSiteProfiles Zinc finger PHD-type profile. 374 426 IPR019787 -
Cone15ag1199 1193 SUPERFAMILY FYVE/PHD zinc finger 367 433 IPR011011 -
Cone15ag1199 1193 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 11 683 - -
Cone15ag1199 1193 SMART PHD_3 376 424 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1199 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1199 Cone-Chr15:9576792 Cone8ag0032 Cone-Chr8:202147 7.13E-06 dispersed
Cone14ag1182 Cone-Chr14:9670525 Cone15ag1199 Cone-Chr15:9576792 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g580 . . . . . . . . Cmo16g00950 . . . . . . . . . . . . . . . Cla10g00470 Cam10g0457 Cec10g0479 Cco10g0466 Clacu10g0477 Cmu10g1306 Cre10g0711 . . Cone14ag1182 Cone15ag1199 . Csa03g00472 . Cme06g02834 . Blo10g00851 . Bda12g00937 . . . . Sed08g2972 . . . . . . . . Bhi11g00572 Tan01g1753 Cmetu06g0787 . Hepe06g0022 Mch10g1340 . . . . . . . . Lsi05g00560 . Chy06g01850 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008595 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44907 None None None None Cone TR