Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1202 ATGGCCTCTTACGCAGATTCATGGATAAAGGAGTACAATGAAGCCCAAAAGCTTGCTGATGATATCAATGGCACGATAACTGAGCGGAGTTCCCTTTCTGTATCTGGACCTGACGCCCAGCGCAGTGCGTCTGCTATAAGGCGGAAGATTACGATATTGGGCACTAGGATTGATACCTTACAGTCCCTTCTATCAAAGCTTCCTGGAAAGCAGCCCATGACAGAGAAAGAGTTGAATCGGCGAAAAGAAATGCTTACAAATTTGAGAACAAAAGTTACAGAGATGTCAACAACATTGAACACGTCAAACTCTGCTAATCGTGAAAGCTTGTTCGATCCAGACACAAAGGCAGAAGATTCCATGAACAGGAAGATGCTAGGACTGGATAACAAAGGCCTTCTTGGTCTCCAACAACAAATTATTAAAGAGCAAGATGAAGGCCTTGAAAAGCTGCAAGAGACTGTTATAAGTACAAAACATATTGCATTGGCAGTAAATGAAGAACTTGACCTTCACACTAGACTAATTGATCAGTTGGACCAACATGTGGATGTTACCGATTCCCGGTTAATGCAAGTGCAGAAGAAATTGGCGATCTTGAACAAGCGAACTAAGGGCTGTGGCTCCTGCGTGTCGATGCTTTTATCCACTTGCGGGATCGTGGGTCTGGTTGTTGTCATATTGCTTCTCATCAAATACTTGTAG 705 43.4 MASYADSWIKEYNEAQKLADDINGTITERSSLSVSGPDAQRSASAIRRKITILGTRIDTLQSLLSKLPGKQPMTEKELNRRKEMLTNLRTKVTEMSTTLNTSNSANRESLFDPDTKAEDSMNRKMLGLDNKGLLGLQQQIIKEQDEGLEKLQETVISTKHIALAVNEELDLHTRLIDQLDQHVDVTDSRLMQVQKKLAILNKRTKGCGSCVSMLLSTCGIVGLVVVILLLIKYL 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9586818 9589479 - Conep15aG0123100.1 Cone15ag1202 454330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1202 234 PANTHER SYNTAXIN 8 217 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cone15ag1202 234 Pfam SNARE domain 175 226 IPR000727 -
Cone15ag1202 234 CDD SNARE_Qc 141 198 - -
Cone15ag1202 234 SMART tSNARE_6 133 200 IPR000727 -
Cone15ag1202 234 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 138 200 IPR000727 -
Cone15ag1202 234 FunFam syntaxin-51 isoform X2 140 202 - -
Cone15ag1202 234 Gene3D - 140 202 - -
Cone15ag1202 234 SUPERFAMILY SNARE fusion complex 129 199 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1185 Cone-Chr14:9681715 Cone15ag1202 Cone-Chr15:9586818 2.85E-111 wgd
Cone15ag1202 Cone-Chr15:9586818 Cone6ag0041 Cone-Chr6:250828 4.66E-100 wgd
Cone15ag1202 Cone-Chr15:9586818 Cone9ag0047 Cone-Chr9:243349 5.90E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1202 K08503 - cit:102608030 317.775