Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1208 ATGGCGTCTTCTGACGATGAATCAGAGGAATTGCTGCAATCGGTTTCGAATTATTACTTTGAGGACGAAAATTACGAGCCGATCTCGTTCTCCTTTCTTCCGATCCAGTGGTGTGAGGTGGAAAAACCGGTAGGAGAGCAGAAAGATGTGTCTCTCCGTGGTAGCGCCGATAAAGGGCTTCAGAAAGTGTTCAAGCAAGTCGTAGCCTGGAAATATGATATATCCGGAAAGAATCCTGAGGTTTACGTGCTTTCCAAGGAAAACGTTTGGATCAAGCTTCAGAAACCGAAGAAAAGCTTCGAGGAAACGATCAGGAGTGTGTTGGTCACGGTGCAGTGTCTTCATTTTGTGAAGAAAAACCCTGAAATGGCTGGAAAATCCGTGTGGGATCACTTGTCTAAAGTATTCAGCTGGTATGAGGTCCTACCTAACGAGAATGATCTGATGGATCAGATAACCTTAATTCGGGAAGCTGTCAAAAGCAATACTGACTTGGAGAAGTCCAAGTTTTTACTTACATTGCTTGAGGAGAAGCCTGGAAAGCGGAAATCATATGGAGAGGATGCGCAACCGACAAAGAAGACTAGATTTATGGTTGACGACGACGACGACGACGATATGTACGGGGATGAAATTGCAGAAGGGGATGATAGCGACGATATATTTGATTCTGTTTGTGCCATTTGTGATAATGGTGGGGAACTTGTGTGTTGTGAAGGGATCTGCTTGAGGTCATTCCATGCAACTGTAGAAGCTGGTTCTGAATCTCTCTGCGATTCTCTTGGTTTTAGTAAAAGAGAAATAGACGCAATTGATTTTAAATGTGAGAATTGTCTGTATCAACAGCACCAATGCTTTGTTTGTGGGAAGTTAGGCTCGTCTAAAGAGTCTGATGCTGAAGTTTCAAAATGTCTTAATGCCACATGTGGGTTTTTCTATCACCCCCACTGTGTTTCAAAGTTAATTCACCAGAATGATAAAGCTGCTGCAGAAGAACTTGAGAAAAGGATGGCTCAAGGGGACAGGGTTACCTGCCCAATTCACAAGTGCTGTGTTTGTGGACAAGGGGAAAACAGGGAGGTTCTCGAACTGCAGTTTGCTGTGTGCAGGCGCTGTCCAAGATCGTACCACAGAAAATGCCTGCCTAAGAATATTGCATTTGAAGATGATGAGGACAACGGTATCATAACCAGGGCCTGGGATGATCTACTACCAAGTCGCATATTGATATATTGTTTAGACCATAAGATAGAGAAAGAGATTGGAACTCCAATAAGATCCCACATTGTATTCCCTAGTTCAAAGAAGACTGATATTAAGAAAAAGAAGGTTTTTGTTGAAGCGAAGAAAATAAAGCAAACGACTCCATCTCCTAGAAATGCAGAGAAAGTTGCATCAAAAAAGATAAATATTATCCCAAGAGACTCCACAGAGGGAACTATTGCTGTTAAACGACCTAGACTAAATGACCGGTCAGCTTCTGCAATGAAATTGAGTAGTAACAAACACATTGAGAAAAAAACATTACCTGGATCAGATGTCCCTAGGAAAGTGAAAGCAGACAATTCATCTAGAAAACCATTGAATGACAATGCAAAGTTCATCCCAGTGGAGGCAGATAAAGATGCCTTGGGAAACAAGCTGTTTGAATTTATGCAGAAGTCTGAGCTAGTTAAGCCTGGGAAGGTGGATACGCATGCTGGTGAACCTAGTAAACTGGCAACAGTTGAAGCTGAGACCAAGGAATTGAGCAGTGCGTTGCCTCCATTGGATGTTGAGTCGCGGAGGAGAATACTTAGTTTGATGAAAGATGCTGCATCTTCAATCTCATTGGAGGATGTCAAGAAAGAGTATGACGTTCCATCTACTCATGCACACTCCTCAATAGTGGACAAGTTCATGACAGAGGGGAAAGTGCAGGGTGCAGTTGAGGCTGCTCGAACTGCTTTAAAGAAGCTAGAGGAAGGATGCAGCATGGAGGATGCTGCAGCTGTTTGTAATAAACATGTCCTTAAGCAGCTTTTTAAGTGGAGGAACCAGCTAAGAGGATATCTTGCACCTTTTCAGTATGGGATGCGCTACACATCCTTTGGTCGTCATTTTACACAACTGGATAAACTTCAAAAGATTGTTGATAAGCTCCATTGGTATGTTAAGGATGGTGATATGATAGTGGACTTCTGTTGCGGTGCCAATGATTTCAGTATCTTAATGAAGAAAAAACTTGAAGAAACCGGGAAGAAGTGCTCTTACAAAAATTATGATATTATGCCACCAAAGAATGACTTCTGTTATGAAAAGAGAGATTGGATGACTGTAGAACCAAAGGAGCTGCCTTCAGGTTCTCAATTGATCATGGGGCTGAATCCTCCTTTTGGAATCCAAGCTCAATTGGCAAACAAGTTCATTAACAAGGCTCTTGAATTTAAGCCAAAACTCCTCATTCTCATTGCCCCTCCTGAAACAGAGAAATTGGATGAAAAGAATACACCTTATGATCTAGTTTGGGAAGATTATCAAGTTTTGTCAGGAAAGTCCTTTTATCTACCCGGATCCGTGGACGTAAATGACAAACAAATGGAGCAGTGGAATGTGACCCCACCTCTACTGTGTCTCTGGAGTCGCCCTGATTGGTCTTCCAAACACTTGGAAATTGCAGAAAAACATGGTCAAAATTCCGTCCAACCTGAAAACTCCGATTTTAGAAAAAATAGTTCCGGAACGTTTTGCCCGGACCATCCATTGGACGATCAAGAACAAAATGTCGTCATTCCCTCTCTATCCAAAAATAATCTTCCCATTCAAGCCAATGAGCCAGAAGGGTCTGCAATTGAGACAGCTGTCAGGGAAGGATCTTCTTCTGCTCGAAGTGGGACATCATTGGGGAGTAGTCGAGAAAAGGAAGGAAGAGGAAATATACTTGAAGAGGAGAAGGAGGATATAACAAACAATGAGAGATCTTCTGTAAGTTTAGAAGTGGTTCAGAATTCAAAGCTGGGTGGGATGCGTAATTATCAGCCATTGAGGGTTGAGACTCCTTATGGTGGAACTCTGGGAAGCTTGCCAGATGAACCTGGCAGAGTGTACAGATCATGGCCAAGTGAGCTCAACCCGGGCTGGAATATCAATCAGGAATTTGTGGGGTCCAGGAGAGGGAATCTTGCTGATGAATACAGATGGTCCTCCTACATGATAGAACAAGAAGAGAAGAACAGGAGAGAATTCGAACTTCGGGATCGTTTACGTCTCTATGGGCAGCAGCAAGATTCCGGGTATGGTCAGATGGGACAATTTGCTTCTTCTTATGGTCATCATCAATATGGTCCAGTGGCCGAACCGGTGTATAGAATGTCGAGCACAGCCCTGGGCCCCACATCCTCAGTGCCTACAATGAGGAGATATGAACCGAAATTGGACGAGTTGAATCATACAAGGGTGAATGGTTTAGGACCTCCAGGCCCTGGTTTCAGAGGTATACCAGGCCCATACCCAATGAATTTCGCTTCCGGCCCTCATCCAGCATCCTATCCACACCACGAATCCTCCAGTTGGCTTAATGAATAG 3564 43.38 MASSDDESEELLQSVSNYYFEDENYEPISFSFLPIQWCEVEKPVGEQKDVSLRGSADKGLQKVFKQVVAWKYDISGKNPEVYVLSKENVWIKLQKPKKSFEETIRSVLVTVQCLHFVKKNPEMAGKSVWDHLSKVFSWYEVLPNENDLMDQITLIREAVKSNTDLEKSKFLLTLLEEKPGKRKSYGEDAQPTKKTRFMVDDDDDDDMYGDEIAEGDDSDDIFDSVCAICDNGGELVCCEGICLRSFHATVEAGSESLCDSLGFSKREIDAIDFKCENCLYQQHQCFVCGKLGSSKESDAEVSKCLNATCGFFYHPHCVSKLIHQNDKAAAEELEKRMAQGDRVTCPIHKCCVCGQGENREVLELQFAVCRRCPRSYHRKCLPKNIAFEDDEDNGIITRAWDDLLPSRILIYCLDHKIEKEIGTPIRSHIVFPSSKKTDIKKKKVFVEAKKIKQTTPSPRNAEKVASKKINIIPRDSTEGTIAVKRPRLNDRSASAMKLSSNKHIEKKTLPGSDVPRKVKADNSSRKPLNDNAKFIPVEADKDALGNKLFEFMQKSELVKPGKVDTHAGEPSKLATVEAETKELSSALPPLDVESRRRILSLMKDAASSISLEDVKKEYDVPSTHAHSSIVDKFMTEGKVQGAVEAARTALKKLEEGCSMEDAAAVCNKHVLKQLFKWRNQLRGYLAPFQYGMRYTSFGRHFTQLDKLQKIVDKLHWYVKDGDMIVDFCCGANDFSILMKKKLEETGKKCSYKNYDIMPPKNDFCYEKRDWMTVEPKELPSGSQLIMGLNPPFGIQAQLANKFINKALEFKPKLLILIAPPETEKLDEKNTPYDLVWEDYQVLSGKSFYLPGSVDVNDKQMEQWNVTPPLLCLWSRPDWSSKHLEIAEKHGQNSVQPENSDFRKNSSGTFCPDHPLDDQEQNVVIPSLSKNNLPIQANEPEGSAIETAVREGSSSARSGTSLGSSREKEGRGNILEEEKEDITNNERSSVSLEVVQNSKLGGMRNYQPLRVETPYGGTLGSLPDEPGRVYRSWPSELNPGWNINQEFVGSRRGNLADEYRWSSYMIEQEEKNRREFELRDRLRLYGQQQDSGYGQMGQFASSYGHHQYGPVAEPVYRMSSTALGPTSSVPTMRRYEPKLDELNHTRVNGLGPPGPGFRGIPGPYPMNFASGPHPASYPHHESSSWLNE 1187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9613201 9620263 - Conep15aG0123700.1 Cone15ag1208 454336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1208 1187 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 1 1180 - -
Cone15ag1208 1187 CDD PHD2_NSD 284 348 - -
Cone15ag1208 1187 CDD PHD3_NSD 344 383 - -
Cone15ag1208 1187 MobiDBLite consensus disorder prediction 944 985 - -
Cone15ag1208 1187 MobiDBLite consensus disorder prediction 506 527 - -
Cone15ag1208 1187 Pfam Cytosine specific DNA methyltransferase replication foci domain 9 136 IPR022702 -
Cone15ag1208 1187 SMART PHD_3 350 416 IPR001965 -
Cone15ag1208 1187 SMART PHD_3 284 349 IPR001965 -
Cone15ag1208 1187 SMART PHD_3 225 279 IPR001965 -
Cone15ag1208 1187 MobiDBLite consensus disorder prediction 891 906 - -
Cone15ag1208 1187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 281 IPR013083 -
Cone15ag1208 1187 MobiDBLite consensus disorder prediction 506 526 - -
Cone15ag1208 1187 MobiDBLite consensus disorder prediction 1143 1164 - -
Cone15ag1208 1187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 393 IPR013083 -
Cone15ag1208 1187 MobiDBLite consensus disorder prediction 888 917 - -
Cone15ag1208 1187 MobiDBLite consensus disorder prediction 947 966 - -
Cone15ag1208 1187 Pfam Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 281 348 - -
Cone15ag1208 1187 MobiDBLite consensus disorder prediction 968 985 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1208 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag0290 Cone-Chr9:1250669 Cone15ag1208 Cone-Chr15:9613201 6.17E-215 transposed
Cone14ag1189 Cone-Chr14:9707466 Cone15ag1208 Cone-Chr15:9613201 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g591 Blo03g00537 . Bda07g00383 . . . . . . . Cma01g01105 . Car01g00978 . . . Cpe02g00796 Bhi09g01710 . . . . . . . . . . . . . . . Cone14ag1189 Cone15ag1208 Lsi02g01869 Csa07g00996 . . . . . . Bpe11g00561 . . . . Cmo01g01151 . . . . . . . . . . . . . . Cla09g02036 Cam09g2125 Cec09g2190 . . . . . . Chy01g01070 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003000 1 4 2 0 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 1 10 1 1 1 1 1 1 3 1 2 46