Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1222 ATGACGCCTAGTGTAGAACCCAATCCAATGGATATGGACGAGGAACACTTTATCGAAACCAATCCAACGGGCCGATACGGCCGCTACAATGAGTTACTAGGTTGCGGCGCAGTGAAAAAGGTTTACCGAGCCTTTGATCGAGAAGAAGGGATAGAGGTTGCATGGAACCAAGTAAAACTAAGGCATTTTAGCTACGATCCAACCATGATTGATAGGCTCTATTCAGAAGTAAGGTTGCTAAGAACCTTAAAGAACAAGAACATCATATCTTTGTACAGCGTGTGGAGGGATAAGGAACACGACACTTTGAATTTCATTACAGAAGTTTGTGCAAGTGGGAATTTGAGAGAGTATAGGAAGAAACATAAGAATGTTTCAATCAAGGCATTGAAGAACTGGTCTAAGCAAATACTCAAAGGGTTGGATTACCTGCATACCCATGAGCCTTGTGTTATTCATAGAGACCTCAATTGCAGCAATTTGTTTGTTAATGGAAACATTGGCCAGGTGAAGATTGGTGATTTGGGGTTAGCAGCAATAGTAGGGAAAAGTCATTCAGCACATTCGGTATTAGGGACACCGGAATATATGGCACCAGAGCTATACGAAGAAGATTATACCGAAATGGTTGACATCTATTCATTTGGAATGTGCTTACTTGAATTAGTCACACTTGAAATTCCATATAGGGAATGTGATAATGTTGCTAAGATCTATAAGAAAGTTTCTTCTGGGGTGAGACCTCAAGCTCTTGAGAAGGTAACTGATTATGAAGTTAAGAGTTTTATCGAGAAATGCCTTGCTCAGCCTAGGGCCCGCCCTTCTGCGGCACAACTACTTAGGGATCCGTTTTTCAATGAAATCGATGATTTCGAAAGTGATGACTCTATGTCTTCTTGA 900 41.11 MTPSVEPNPMDMDEEHFIETNPTGRYGRYNELLGCGAVKKVYRAFDREEGIEVAWNQVKLRHFSYDPTMIDRLYSEVRLLRTLKNKNIISLYSVWRDKEHDTLNFITEVCASGNLREYRKKHKNVSIKALKNWSKQILKGLDYLHTHEPCVIHRDLNCSNLFVNGNIGQVKIGDLGLAAIVGKSHSAHSVLGTPEYMAPELYEEDYTEMVDIYSFGMCLLELVTLEIPYRECDNVAKIYKKVSSGVRPQALEKVTDYEVKSFIEKCLAQPRARPSAAQLLRDPFFNEIDDFESDDSMSS 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9719898 9721412 - Conep15aG0125100.1 Cone15ag1222 454350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1222 299 FunFam Probable serine/threonine-protein kinase WNK1 12 108 - -
Cone15ag1222 299 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag1222 299 FunFam probable serine/threonine-protein kinase WNK9 110 290 - -
Cone15ag1222 299 CDD STKc_WNK 25 285 - -
Cone15ag1222 299 Gene3D Transferase(Phosphotransferase) domain 1 110 292 - -
Cone15ag1222 299 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 13 287 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cone15ag1222 299 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag1222 299 SUPERFAMILY Protein kinase-like (PK-like) 30 290 IPR011009 -
Cone15ag1222 299 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1222 Cone-Chr15:9719898 Cone16ag0070 Cone-Chr16:356792 1.02E-126 dispersed
Cone3ag1295 Cone-Chr3:31818478 Cone15ag1222 Cone-Chr15:9719898 2.15E-165 transposed
Cone14ag1205 Cone-Chr14:9809900 Cone15ag1222 Cone-Chr15:9719898 7.49E-162 wgd
Cone15ag1222 Cone-Chr15:9719898 Cone6ag0029 Cone-Chr6:182398 7.29E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82173 PF01565 FAD_binding_4 8.10E-24 CL0077 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1222 K08867 - rcu:8277577 512.686