Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1237 ATGGGCGAGGAAGATACATTGACTGAGGTCAGTGAGACAGTGGCAAATGGGGTCAGCAAGGTGGAGAAAACCAGTGAAACTGACAATAAGAAGAAAGGAGAGGAAAATGGTGGGGTAAATGAAATGAAAGAAGATCAGAAAACTGATAAGGAAGTGGAGACTGAGAAAATGGATGAAGACAGAGAGGTCAAGGAAGGAAAGGAAGTGAAAGAAGCAGCCAAGGAAGAGAAGAAAGGAACAGGAGAAGCTAAGGAAGAAAAGGAAGAACCAGAAGTAGTTGCAATGGAGGAAGATTCACATGTAAATGAAAAGGAGAAGAGTGGAGAAAAAGAGAATATCAAGGAAGAAGTGGAGAAGGTTGACGGAGCAAAAAAGGAGGAAAAAGATAAAGGTGAAGAGAAGGCAGAAGAACCTAACGAGAAAGAAGATAAAGTGGTAAATGATGCAAAAACTGAGGAGGTAGAAGTTAAAGATGATGAGAAGGCTTTAGAGCCTGAGCAGGAAGAGGATAAAGAGGGAGAGAAGGTGGAAGAGCCTGAGGATGAAGAAGATAAAGATGAAGAGAAGGCAGAAGAACCCAAGGAGGATAAGAGTTCAAAGAAACGTGCAAGGGGACACAGTGATAAAAAAGTTAAAGTAAAGAAGAAGGAAGTTGAAAAGAAGGAGCCTGAGCAACATACTCCTTTTTCTGATCGCCCAGTGCGTGAGCGCAAAACAGTCGAAAGGTTGGTGGCATCCATTGAAAGGGAGTCCGTCAAGGAATTTCAAATTGAAAAGGGCAGTGGAACCCCACTTAAAGATATACCTAATGTGGCATTTAAGTTGTCAAGGAAGAAGACAGATGATACATTCAAGCTGCTTCATACAGTTCTCTTTGGTAGGAGAGGGAAGGCAATTCAGGTGAAGAGCAATATCTTGAGGTTTTCTGGTTTCATGTGGCATGGAAATGAGGAAAAACAGAAGAGTAGAGTGAAAGAGAAACTTGACAAATGTAATAAAGAGAAATTGCTGGAATTTTGTGAACTTCTTGACCTCCCAATTGCCAGAGCTACAACGAGGAAGGAAGATATTGTTGCAAAGCTGATAGACTTTTTGATGGCTCCTCATCCCACAACCGCCGTGCTTCTTGCTGAAAAAGAAAAGTCGAGCAAGGGACAGAAGCGCAAGAGGACGAGCAAAGGAGGTTCTTCAACTCCAGGAAGTACCAGCTCAAAACGAGCATCAAAGAAGAGTGGAGGTACTTCAAAGAGTGATATGATGGACTCATCAGAAGGGGAAGATGAATCAGAAGAAGAGGAAAAGGAGGAAGAAGAACAAGAAGAAGAGAAGGACGAGGAAATTGAAAATGGTGTCCAGGAAAAGTCAGAGGATGAGATCCCTGAGCCCTCAGAAAGTGAGGAGAAAGAAGAGGATCCAACAGATGAAGAATCTGAAGAAGAAAAACCCAAACGGAGGTCTAAAGCTTCATCAAAGAAGAAGGAATCTGCTGGAAAAGCTAGAACCAAGAAAACTCCAGTTTCAGATAAATCTAGTCCTCCACCCAAAAAGACAATAAAGCAATCATCGGCAAAGCGTTCTAAGGTTGAAGATGACGATGATACAAGTCCTAAGGTATTCTCAAGGAGGAAGAGTAATGAAAAAGTGCCTAAGGAGAAGGTCTCAAGTTCTAAGAAATCTGCTTCCAAGGAAAAAAATGAGAAAAAGGTTGCTAAAGGGAAGGACAAGAGCAAAGAGGACAAAGTCAGGCCTAGCGATGATGAATTGAGAGATGCTATTTGTGAAATTCTAAAAGAAGTGGACTTCAATACGGCTACTTTCACCGACATTCTGAAGCTACTTGCTAAGAAGTTTGACGCAGATCTCACCCCAAGAAAGTCATCCATAAAGCTTGTGATCCAAGAAGAGCTTACCAAACTAGCTGATGAAGCAGATGAAGAAGATGGAGAAGGCGATGCTGCTGAGAAGAAAGAAGAAAAACAGTCGGCAGCTCAAGAGGTGGAAACCTAA 2007 42.15 MGEEDTLTEVSETVANGVSKVEKTSETDNKKKGEENGGVNEMKEDQKTDKEVETEKMDEDREVKEGKEVKEAAKEEKKGTGEAKEEKEEPEVVAMEEDSHVNEKEKSGEKENIKEEVEKVDGAKKEEKDKGEEKAEEPNEKEDKVVNDAKTEEVEVKDDEKALEPEQEEDKEGEKVEEPEDEEDKDEEKAEEPKEDKSSKKRARGHSDKKVKVKKKEVEKKEPEQHTPFSDRPVRERKTVERLVASIERESVKEFQIEKGSGTPLKDIPNVAFKLSRKKTDDTFKLLHTVLFGRRGKAIQVKSNILRFSGFMWHGNEEKQKSRVKEKLDKCNKEKLLEFCELLDLPIARATTRKEDIVAKLIDFLMAPHPTTAVLLAEKEKSSKGQKRKRTSKGGSSTPGSTSSKRASKKSGGTSKSDMMDSSEGEDESEEEEKEEEEQEEEKDEEIENGVQEKSEDEIPEPSESEEKEEDPTDEESEEEKPKRRSKASSKKKESAGKARTKKTPVSDKSSPPPKKTIKQSSAKRSKVEDDDDTSPKVFSRRKSNEKVPKEKVSSSKKSASKEKNEKKVAKGKDKSKEDKVRPSDDELRDAICEILKEVDFNTATFTDILKLLAKKFDADLTPRKSSIKLVIQEELTKLADEADEEDGEGDAAEKKEEKQSAAQEVET 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9784110 9789085 + Conep15aG0126600.1 Cone15ag1237 454365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1237 668 MobiDBLite consensus disorder prediction 639 668 - -
Cone15ag1237 668 Gene3D - 573 638 - -
Cone15ag1237 668 MobiDBLite consensus disorder prediction 377 588 - -
Cone15ag1237 668 MobiDBLite consensus disorder prediction 162 189 - -
Cone15ag1237 668 SUPERFAMILY DEK C-terminal domain 578 636 - -
Cone15ag1237 668 MobiDBLite consensus disorder prediction 1 236 - -
Cone15ag1237 668 Pfam DEK C terminal domain 583 636 IPR014876 -
Cone15ag1237 668 MobiDBLite consensus disorder prediction 23 161 - -
Cone15ag1237 668 Coils Coil 420 449 - -
Cone15ag1237 668 MobiDBLite consensus disorder prediction 392 419 - -
Cone15ag1237 668 Coils Coil 106 130 - -
Cone15ag1237 668 PANTHER DEK PROTEIN 119 649 IPR044198 GO:0003677(InterPro)|GO:0005634(PANTHER)|GO:0006325(InterPro)|GO:0042393(PANTHER)|GO:2000779(PANTHER)
Cone15ag1237 668 Coils Coil 314 334 - -
Cone15ag1237 668 MobiDBLite consensus disorder prediction 423 447 - -
Cone15ag1237 668 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 582 637 IPR014876 -
Cone15ag1237 668 MobiDBLite consensus disorder prediction 212 236 - -
Cone15ag1237 668 FunFam DEK domain-containing chromatin associated protein 573 638 - -
Cone15ag1237 668 MobiDBLite consensus disorder prediction 459 476 - -
Cone15ag1237 668 MobiDBLite consensus disorder prediction 522 588 - -
Cone15ag1237 668 MobiDBLite consensus disorder prediction 652 668 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1237 K17046 - - mdm:103439542 470.314
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0236 Cone-Chr13:1549079 Cone15ag1237 Cone-Chr15:9784110 3.12E-38 dispersed
Cone15ag1237 Cone-Chr15:9784110 Cone19ag0222 Cone-Chr19:1406799 4.86E-39 dispersed
Cone14ag1216 Cone-Chr14:9898688 Cone15ag1237 Cone-Chr15:9784110 1.03E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g658 . . . . . . . Bma13g01112 . Cmo06g00688 . . . . . . . . . . . . . . Cla10g00437 Cam10g0436 Cec10g0458 Cco10g0447 Clacu10g0444 Cmu10g1275 Cre10g0691 . . Cone14ag1216 Cone15ag1237 . . . . . Blo10g00863 . Bda12g00961 . . . . . . . . . . . Cpe14g00791 . . . . . . . . . . . . . . . Lsi05g00493 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007248 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 2 1 36