Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone15ag1238 | ATGGCAGACTCGGACAACGAATCCGGAGGCGGGCTTACGGCGGGGACGAACAGCGAGCTATCGCTGCGAGAGCAGGACAGGCTATTGCCGATAGCTAACGTGAGCAGGATCATGAAGAAAGCGCTCCCGGCGAACGCGAAGATCTCGAAGGACGCGAAGGAGACAGTTCAGGAGTGCGTATCGGAGTTCATAAGCTTCATCACCGGAGAAGCTTCGGACAAGTGCCAGAGAGAGAAGCGGAAGACGATCAACGGCGACGATTTGCTTTGGGCTATGACAACGTTAGGTTTCGAAGATTACGTGGAGACGCTCAAGGTTTACTTGCAGAGGTTCAGGGAGATGGAAGGAGAGAAGAACGCGATGGTGACGCGTGAAAAAGATGGCGGAGGGGGGAGCTTGGTTAATGGTGGTGTTACAGGTGGTAGCAGCAGTACTAGCAGTGGGTTTAGTAGGGACGGTGGGCCCAGTGGGGTATATGAGAGTGGAATGGGTATGATGATGATGATGGGGCAACACCAGCATCAACAGGGACACGCGTACGGCTCAGGCGGGTTTCATCAGATGGCTGTGAGTGGTGGGCTGAGTAAGAGTGGATCTGGTCATTCTGGGTCTGGGTCCGATTCAAGTAGACCCATCTAG | 639 | 54.46 | MADSDNESGGGLTAGTNSELSLREQDRLLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVETLKVYLQRFREMEGEKNAMVTREKDGGGGSLVNGGVTGGSSSTSSGFSRDGGPSGVYESGMGMMMMMGQHQHQQGHAYGSGGFHQMAVSGGLSKSGSGHSGSGSDSSRPI | 212 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 9791392 | 9792848 | + | Conep15aG0126700.1 | Cone15ag1238 | 454366 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone15ag1238 | 212 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 16 | 164 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER) | |
Cone15ag1238 | 212 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cone15ag1238 | 212 | MobiDBLite | consensus disorder prediction | 192 | 212 | - | - | |
Cone15ag1238 | 212 | FunFam | Nuclear transcription factor Y subunit B-3 | 17 | 136 | - | - | |
Cone15ag1238 | 212 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 59 | 75 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone15ag1238 | 212 | MobiDBLite | consensus disorder prediction | 123 | 162 | - | - | |
Cone15ag1238 | 212 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 28 | 92 | IPR003958 | - | |
Cone15ag1238 | 212 | MobiDBLite | consensus disorder prediction | 136 | 152 | - | - | |
Cone15ag1238 | 212 | SUPERFAMILY | Histone-fold | 25 | 127 | IPR009072 | GO:0046982(InterPro) | |
Cone15ag1238 | 212 | Gene3D | Histone, subunit A | 17 | 135 | IPR009072 | GO:0046982(InterPro) | |
Cone15ag1238 | 212 | PRINTS | CCAAT-binding transcription factor subunit A signature | 94 | 112 | - | - | |
Cone15ag1238 | 212 | PRINTS | CCAAT-binding transcription factor subunit A signature | 56 | 74 | - | - | |
Cone15ag1238 | 212 | PRINTS | CCAAT-binding transcription factor subunit A signature | 75 | 93 | - | - | |
Cone15ag1238 | 212 | MobiDBLite | consensus disorder prediction | 190 | 212 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone15ag1238 | Cone-Chr15:9791392 | Cone3ag0290 | Cone-Chr3:1505735 | 8.04E-55 | dispersed | |
Cone15ag1238 | Cone-Chr15:9791392 | Cone15ag1243 | Cone-Chr15:9811904 | 9.29E-40 | proximal | |
Cone14ag1217 | Cone-Chr14:9905417 | Cone15ag1238 | Cone-Chr15:9791392 | 1.14E-102 | wgd | |
Cone15ag1238 | Cone-Chr15:9791392 | Cone5ag1798 | Cone-Chr5:12749061 | 1.08E-45 | wgd | |
Cone15ag1238 | Cone-Chr15:9791392 | Cone8ag1366 | Cone-Chr8:10907603 | 2.97E-61 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44910 | PF00067 | p450 | 2.00E-104 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone15ag1238 | K08065 | - | mdm:103439543 | 238.81 |