Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1238 ATGGCAGACTCGGACAACGAATCCGGAGGCGGGCTTACGGCGGGGACGAACAGCGAGCTATCGCTGCGAGAGCAGGACAGGCTATTGCCGATAGCTAACGTGAGCAGGATCATGAAGAAAGCGCTCCCGGCGAACGCGAAGATCTCGAAGGACGCGAAGGAGACAGTTCAGGAGTGCGTATCGGAGTTCATAAGCTTCATCACCGGAGAAGCTTCGGACAAGTGCCAGAGAGAGAAGCGGAAGACGATCAACGGCGACGATTTGCTTTGGGCTATGACAACGTTAGGTTTCGAAGATTACGTGGAGACGCTCAAGGTTTACTTGCAGAGGTTCAGGGAGATGGAAGGAGAGAAGAACGCGATGGTGACGCGTGAAAAAGATGGCGGAGGGGGGAGCTTGGTTAATGGTGGTGTTACAGGTGGTAGCAGCAGTACTAGCAGTGGGTTTAGTAGGGACGGTGGGCCCAGTGGGGTATATGAGAGTGGAATGGGTATGATGATGATGATGGGGCAACACCAGCATCAACAGGGACACGCGTACGGCTCAGGCGGGTTTCATCAGATGGCTGTGAGTGGTGGGCTGAGTAAGAGTGGATCTGGTCATTCTGGGTCTGGGTCCGATTCAAGTAGACCCATCTAG 639 54.46 MADSDNESGGGLTAGTNSELSLREQDRLLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVETLKVYLQRFREMEGEKNAMVTREKDGGGGSLVNGGVTGGSSSTSSGFSRDGGPSGVYESGMGMMMMMGQHQHQQGHAYGSGGFHQMAVSGGLSKSGSGHSGSGSDSSRPI 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9791392 9792848 + Conep15aG0126700.1 Cone15ag1238 454366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1238 212 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 164 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cone15ag1238 212 MobiDBLite consensus disorder prediction 1 21 - -
Cone15ag1238 212 MobiDBLite consensus disorder prediction 192 212 - -
Cone15ag1238 212 FunFam Nuclear transcription factor Y subunit B-3 17 136 - -
Cone15ag1238 212 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag1238 212 MobiDBLite consensus disorder prediction 123 162 - -
Cone15ag1238 212 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Cone15ag1238 212 MobiDBLite consensus disorder prediction 136 152 - -
Cone15ag1238 212 SUPERFAMILY Histone-fold 25 127 IPR009072 GO:0046982(InterPro)
Cone15ag1238 212 Gene3D Histone, subunit A 17 135 IPR009072 GO:0046982(InterPro)
Cone15ag1238 212 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Cone15ag1238 212 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Cone15ag1238 212 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Cone15ag1238 212 MobiDBLite consensus disorder prediction 190 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1238 Cone-Chr15:9791392 Cone3ag0290 Cone-Chr3:1505735 8.04E-55 dispersed
Cone15ag1238 Cone-Chr15:9791392 Cone15ag1243 Cone-Chr15:9811904 9.29E-40 proximal
Cone14ag1217 Cone-Chr14:9905417 Cone15ag1238 Cone-Chr15:9791392 1.14E-102 wgd
Cone15ag1238 Cone-Chr15:9791392 Cone5ag1798 Cone-Chr5:12749061 1.08E-45 wgd
Cone15ag1238 Cone-Chr15:9791392 Cone8ag1366 Cone-Chr8:10907603 2.97E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44910 PF00067 p450 2.00E-104 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1238 K08065 - mdm:103439543 238.81