Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1243 ATGGGGGAGGGTTTGGTTCAGAAGAGAGAAAACCCAAGTAGTTTTGTTTGCTTCCCCAAAGCCTCGACCAATAACATCGATGCTATCGTCATTGCTTCCGCCACCACTGCCATCACGGCTTCAACAGACAACAACAACAACAACGTTAACGAACATGTGCAGCAGTGTGTTGTGCGAGAACAGGATCAATACATGCCGATAGCCAATGTGATTCGTATTATGCGTCGGATCCTCCCGTCTCATGCAAAGATCTCCGATGATGCAAAAGAGACGATTCAAGAATGTGTGTCGGAGTATATAAGCTTTATAACTGGAGAGGCTAATGAAAGGTGCCAGCGTGAGCAAAGGAAAACGGTTACGGCTGAGGATGTTCTTTGGGCCATGGGGAAATTGGGATTTGATGATTATATCGAGCCGCTTACTTTGTTCCTCAACCGGTACCGTGAGTCCGAGAATGATCGGACTCGCGGGGAGCAGCCCATTTTGAGAAGGGGAGTTGATTATGGGCCTCAAGTTCCTATGATGGGTCCTTACGTGCCAGGATATCTGATGGGTCATGTGCCGGGGACAGGGATGTTTGATGCGGCGAACGCGGCGAACGCTATGGGGTTGTATTACAATGCTGGACCTATTGCTGGGCCACCTGCCGGGAATGGTATGGGAAATAACTTCGATCCTTATGGTCAGTTTAAATAA 696 48.56 MGEGLVQKRENPSSFVCFPKASTNNIDAIVIASATTAITASTDNNNNNVNEHVQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTLFLNRYRESENDRTRGEQPILRRGVDYGPQVPMMGPYVPGYLMGHVPGTGMFDAANAANAMGLYYNAGPIAGPPAGNGMGNNFDPYGQFK 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9811904 9813201 + Conep15aG0127200.1 Cone15ag1243 454371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1243 231 PRINTS CCAAT-binding transcription factor subunit A signature 130 148 - -
Cone15ag1243 231 PRINTS CCAAT-binding transcription factor subunit A signature 111 129 - -
Cone15ag1243 231 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Cone15ag1243 231 Gene3D Histone, subunit A 51 165 IPR009072 GO:0046982(InterPro)
Cone15ag1243 231 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 41 156 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cone15ag1243 231 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 65 128 IPR003958 -
Cone15ag1243 231 ProSitePatterns NF-YB/HAP3 subunit signature. 95 111 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag1243 231 FunFam Nuclear transcription factor Y subunit B-6 53 165 - -
Cone15ag1243 231 SUPERFAMILY Histone-fold 61 157 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1222 Cone-Chr14:9927622 Cone15ag1243 Cone-Chr15:9811904 6.34E-105 dispersed
Cone15ag1243 Cone-Chr15:9811904 Cone5ag1798 Cone-Chr5:12749061 3.49E-60 dispersed
Cone15ag1238 Cone-Chr15:9791392 Cone15ag1243 Cone-Chr15:9811904 9.29E-40 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44911 PF05764 YL1 6.60E-35 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1243 K08065 - csv:116402762 256.529