Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1248 ATGGCCACGAACATATTGACGGGAGAAATCCCGTATATGAAACTTGGGTTGGACCGACGAACAGGATTTAACTGGTTCCTAACTTCTTGGAAGGCCGTCAATGATCCAGGAACAGGGAGTTTCACATATAGAATTGATCCGACCGGGTTTCCTCAGTTGTTTGTAGACAATGGCCGGTCTCCATGGTGGCGGGGTGGGCCCTGGACCGGACATAGATGGAGCGGCGTGCCGGAGATGGCACCTAACTTTATAATTAATGTTAGTTATGTGGATAATATTAGTGAAGTATCTACATCATATGGTGTTACTGATAACTCAATTACGAGGAAGGTGTTGGATGAATCCGGATTCATCCGACGGTCCAGGTGGGACGATCAGGACGGGAAATGGTTTGAGTTTTGGTCCGCCCCGGTCCACTGGTGTGACAAGTGCGGTCAATGTGGTCCGAATAGCAATTGTGACCCGGACCGGACAGAGTTATTTGTGTGCACGTGCTTACCCGGGTTCGAACCCAAGTCGCCCCGAGTTTGGTACTTGAGAGACGGGTCAAGTGGGTGTGTGAGGAAGCAAAATGTATCCACGTGTCGAAGTGGGGAAGGGTTTGTGACAGTGTCACGAGTGAAGGTGCCCGACACATCGGTGGCGCGTGTGAACATGAGTATGAGCTTGGAAGCATGTAAGGAAGAGTGCTTGAAGAATTGTTCGTGCGTGGGTTACACGAGTGCGGATGACAGTGGGGGAGGAACTGGGTGCGTGATGTGGCACGGGGATTTGATGGATACGAGGACGTACGGTGCTGCTGTGGGTCAACAAGATTTATACGGAGTGCTCTATGATGGAAAAGAAATAGCAGTGAAAAGACTAAGTAAGCATTCAGGGCAGGGAATACAAGAGCTCAAGAATGAAATAACATTGATAGCACAACTCCAACACAGAAACCTGGTCAAGATTTTAGGCTTTTGCATCCAAGATGAAGAGAAGTTGCTCATTTATGAATACTTGCCTAACAAAAGCTTGGACTCTTTTATCTTTGATGAAATAAAAAAAGAATTTTTAGATTGGAAAAAACGTTATGAGATCATTATCGGTGTAGCTCGTGGAATGTTATACCTTCATCAAGATTCAAGATTAAGAATAATTCATAGAGATCTGAAGGCGAGCAATGTTCTACTAGATGCCGATTTAAACCCCAAAATAGCAGATTTTGGCATGGCAAGAATTTTCGGAGGGGATCAAATGGAAGCCAATACCACTCGAGTTGTTGGAACATACGGTTATATGTCTCCAGAATATGCTATGGAAGGGTTATTTTCGATAAAGTCAGACGTATACAGCTTCGGAGTTTTGCTCTTAGAGATCATTACTGGTAGAAAGAACAGCAATTACTACCATGACGAATCATCTTTGAATCTAGTCGGACATGTTTGGAAGTTATGGAAAGAAGGGAGAGGAATGGAAATAGTTGACACAACCTTGGATGAATCCGATTATGGTGAGATTGTAAGATATGTACACATTGGGCTGTTGTGCGTGCAGGAGCAGGCAGCTGATCGACCCAAAATGTCGGCAGTTGTGTTCATGTTAAGCAATGACGTGCCACTTCCGACACCAAAACAGCCTGCATTCATTATAAAGAGAAACTATAATTGCAATCACGGAACAGATCCATCTACCAGTGAAGGAGCTAATTCTGCAAATGACCTAACTTTTACCGTTCTTGAAGCTCGTTGA 1731 44.71 MATNILTGEIPYMKLGLDRRTGFNWFLTSWKAVNDPGTGSFTYRIDPTGFPQLFVDNGRSPWWRGGPWTGHRWSGVPEMAPNFIINVSYVDNISEVSTSYGVTDNSITRKVLDESGFIRRSRWDDQDGKWFEFWSAPVHWCDKCGQCGPNSNCDPDRTELFVCTCLPGFEPKSPRVWYLRDGSSGCVRKQNVSTCRSGEGFVTVSRVKVPDTSVARVNMSMSLEACKEECLKNCSCVGYTSADDSGGGTGCVMWHGDLMDTRTYGAAVGQQDLYGVLYDGKEIAVKRLSKHSGQGIQELKNEITLIAQLQHRNLVKILGFCIQDEEKLLIYEYLPNKSLDSFIFDEIKKEFLDWKKRYEIIIGVARGMLYLHQDSRLRIIHRDLKASNVLLDADLNPKIADFGMARIFGGDQMEANTTRVVGTYGYMSPEYAMEGLFSIKSDVYSFGVLLLEIITGRKNSNYYHDESSLNLVGHVWKLWKEGRGMEIVDTTLDESDYGEIVRYVHIGLLCVQEQAADRPKMSAVVFMLSNDVPLPTPKQPAFIIKRNYNCNHGTDPSTSEGANSANDLTFTVLEAR 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9841560 9843841 + Conep15aG0127700.1 Cone15ag1248 454376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1248 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 379 391 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag1248 576 CDD STKc_IRAK 274 528 - -
Cone15ag1248 576 ProSiteProfiles PAN/Apple domain profile. 195 278 IPR003609 -
Cone15ag1248 576 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 540 - -
Cone15ag1248 576 CDD PAN_AP_plant 193 274 - -
Cone15ag1248 576 Gene3D Transferase(Phosphotransferase) domain 1 334 533 - -
Cone15ag1248 576 Pfam S-locus glycoprotein domain 63 173 IPR000858 GO:0048544(InterPro)
Cone15ag1248 576 Pfam PAN-like domain 195 261 IPR003609 -
Cone15ag1248 576 SUPERFAMILY Protein kinase-like (PK-like) 275 528 IPR011009 -
Cone15ag1248 576 SMART serkin_6 239 527 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag1248 576 Gene3D Phosphorylase Kinase; domain 1 260 333 - -
Cone15ag1248 576 FunFam Putative DUF26-domain receptor-like protein kinase family protein 265 333 - -
Cone15ag1248 576 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 334 535 - -
Cone15ag1248 576 Pfam Protein tyrosine and serine/threonine kinase 281 525 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag1248 576 ProSiteProfiles Protein kinase domain profile. 239 542 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag1248 576 SMART ntp_6 196 277 IPR003609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1248 Cone-Chr15:9841560 Cone15ag1260 Cone-Chr15:9942343 0 dispersed
Cone15ag1248 Cone-Chr15:9841560 Cone15ag1250 Cone-Chr15:9870262 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82176 PF06632 XRCC4 2.20E-15 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1248 - - - 0.0