Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1250 ATGGCACCTAACTTTATAATTAATGTTAGTTATGTGGATAATATTAGTGAAGTATCTACATCATATGGTGTTACTGATAACTCAATTACGAGGAAGGTGTTGGATGAATCCGGATTCATCCGACGGTCCAGGTGGGACGATCAGGACGGGAAATGGTTTGAGTTTTGGTCCGCCCCGGTCCACTGGTGTGACAAGTACGGTCAATGTGGTCCGAATAGCAATTGTGACCCGGACCGGACAGAGTTATTTGTGTGCACGTGCTTACCCGGGTTCGAACCCAAGTCGCCCCGAGATTGGGACTTGAGAGACGGGTCAAGTGGGTGTGTGAGGAAGCAAAATGTATCCACGTGTCGAAGTGGGGAAGGGTTTGTGACAGTGTCACGAGTGAAGGTGCCCGACACATCGGTGGCGCGTGTGAACATGAGTATGAGCTTGGAAGCATGTAAGGAAGAGTGCTTGAAGAATTGTTCGTGCGTGGGTTACACGAGTGCGGATGACAGTGGGGGAGGAACTGGGTGCGTGATGTGGCACGGGGATTTGATGGATACGAGGACGTACGGTGCTGCTGTGGGTCAACAAGATTTATACGGAGTGCTCTATGATGGAAAAGAAATAGCAGTGAAAAGACTAAGTAAGCATTCAGGGCAGGGAATACAAGAGCTCAAGAATGAAATAACATTGATAGCACAACTCCAACACAGAAACCTGGTCAAGATTTTAGGCTTTTGCATCCAAGATGAAGAGAAGTTGCTCATTTATGAATACTTGCCTAACAAAAGCTTGGACTCTTTTATCTTTGATGAAATAAAAAAAGAATTTTTAGATTGGAGAAAACGTTCTGAGATCATTATCGGTGTATCTCGTGGAATGTTATACCTTCATCAAGATTCAAGATTAAGAATAATTCATAGAGATCTGAAGACGAGCAATGTTCTATTAGACGCCGATTTAAACCCCAAAATAGCAGATTTTGGCATGGCAAGAATTTTCGGAGGGGATCAAATGGAAGCCAATACCACTCGAGTTGTTGGAACATACGGTTATATGTCTCCAGAATATGCTATGGAAGGGTTATTTTCGATAAAGTCAGACGTATACAGCTTCGGAGTTTTGCTCTTAGAGATCATTACTGGTAGAAAGAACAGCAATTACTACCATGACGAATCATCTTTGAATTTAGTCGGACATGTTTGGAAGTTATGGAAAGAAGGGAGAGGAATGGAAATAGTTGACACAACCTTGGATGAATCCGATTATGGTGAGATTGTAAGATATGTACACATTGGGCTGTTGTGCGTGCAGGAGCAGGCAGCTGATCGACCCAAAATGTCGGCAGTTGTGTTCATGTTAAGCAATGACGTGCCACTTCCGACACCAAAACAGCCTGCATTCATTATAAAGAGAAACTATAATTGCAATCACGGAACAGATCCATCTACCAGTGAAGGAGCTAATTCTGCAAATGACCTAACTTTTACTGTTCTTGAAGCTCGTTGA 1497 43.35 MAPNFIINVSYVDNISEVSTSYGVTDNSITRKVLDESGFIRRSRWDDQDGKWFEFWSAPVHWCDKYGQCGPNSNCDPDRTELFVCTCLPGFEPKSPRDWDLRDGSSGCVRKQNVSTCRSGEGFVTVSRVKVPDTSVARVNMSMSLEACKEECLKNCSCVGYTSADDSGGGTGCVMWHGDLMDTRTYGAAVGQQDLYGVLYDGKEIAVKRLSKHSGQGIQELKNEITLIAQLQHRNLVKILGFCIQDEEKLLIYEYLPNKSLDSFIFDEIKKEFLDWRKRSEIIIGVSRGMLYLHQDSRLRIIHRDLKTSNVLLDADLNPKIADFGMARIFGGDQMEANTTRVVGTYGYMSPEYAMEGLFSIKSDVYSFGVLLLEIITGRKNSNYYHDESSLNLVGHVWKLWKEGRGMEIVDTTLDESDYGEIVRYVHIGLLCVQEQAADRPKMSAVVFMLSNDVPLPTPKQPAFIIKRNYNCNHGTDPSTSEGANSANDLTFTVLEAR 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9870262 9872520 + Conep15aG0127900.1 Cone15ag1250 454378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1250 498 Gene3D Transferase(Phosphotransferase) domain 1 256 455 - -
Cone15ag1250 498 SUPERFAMILY Protein kinase-like (PK-like) 197 450 IPR011009 -
Cone15ag1250 498 SMART ntp_6 118 199 IPR003609 -
Cone15ag1250 498 CDD PAN_AP_plant 115 196 - -
Cone15ag1250 498 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 256 457 - -
Cone15ag1250 498 SMART serkin_6 161 449 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag1250 498 FunFam Putative DUF26-domain receptor-like protein kinase family protein 187 255 - -
Cone15ag1250 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 301 313 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag1250 498 Pfam PAN-like domain 117 183 IPR003609 -
Cone15ag1250 498 Pfam S-locus glycoprotein domain 5 95 IPR000858 GO:0048544(InterPro)
Cone15ag1250 498 ProSiteProfiles PAN/Apple domain profile. 117 200 IPR003609 -
Cone15ag1250 498 ProSiteProfiles Protein kinase domain profile. 161 464 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag1250 498 Pfam Protein tyrosine and serine/threonine kinase 203 447 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag1250 498 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 196 465 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone15ag1250 498 Gene3D Phosphorylase Kinase; domain 1 182 255 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1250 Cone-Chr15:9870262 Cone15ag1260 Cone-Chr15:9942343 0 dispersed
Cone15ag1248 Cone-Chr15:9841560 Cone15ag1250 Cone-Chr15:9870262 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82177 PF02458 Transferase 7.50E-41 CL0149 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1250 - - - 0.0