Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1260 ATGAATTCAACGAAATTATATTTTTATTCTCGTACTGTTCTTCTTCTTCTTCATCATCTAGTAATTTTCCACATCTGTGTTGCCCTTGGGATCAATAACACACTGTCTTCAAACGACATCGTACGGGATGGAGATAAACTCGTTTCCAGAAACAAAACCTTTGCTCTTGGCTTCTTCAGCCCCGGAGACTCGCCACGCCGGTATGTCGGAATTTGGTACAACAAAGTTCCGGATCAAACAGTTGTCTGGGTCGCCAACAGAGACAACCCTCTCAATGACACGTCGGGCGCTCTTTCCATCAACACCCGTGGAAACCTCATTATTTACACAAAAACCCCAGATGTTCCTCTCTGGTCAACTAACATTTCATCACTCTTCTCGACAAAACCCACCATGGCCAAGCTTCTAGATTCAGGGAATCTTGTTATAACTCAACCGGAGAGCCAAGAGATTATTTGGCAAAGCTTTGATTACCCTACAAACACCTTGCTTCCGTATATGAAACTTGGGTTGGACCGACAAACCGGGTTTACCTGGTTCCTAACTTCTTGGAAGGCGGTCAATGATCCGGGAACAGGAAATTTCTCACATAAAATTGACCCGACCGGATTTTCTCAGTCCTTTATATACAAGGACCGGTCTCCATGGTGGCGGGGTGGGCCCTGGACCGGACATAGATGGAGCGGCGTGCCGGAGATGGCACCTAACTTTATAATTAATGTTAGTTATGTGGATAATATTAGTGAAGTATCTACATCATATGGTGTTACTGATAACTCAATTACGAGGAAGGTGTTGGATGAATCCGGATTCATCCGACGGTCCAGGTGGGACGATCAGGACGGGAAATGGTTTGAGTTTTGGTCCGCCCCGGTCCACTGGTGTGACAAGTACGGTCAATGTGGTCCGAATAGCAATTGTGACCCGGACCGGACAGAGTTATTTGTGTGCACGTGCTTACCCGGGTTCGAACCCAAGTCGCCCCGAGATTGGTACTTGAGAGACGGGTCAAGTGGGTGTGTGAGGAAGCAAAATGTATCCACGTGTCGAAGTGGGGAAGGGTTTGTGACAGTGTCACGAGTGAAGGTGCCCGACACATCGGTGGCGCGTGTGAACATGAGTATGAGCTTGGAAGCATGTAAGGAAGAGTGCTTGAAGAATTGTTCGTGCGTGGGTTACACGAGTGCGGATGACAGTGGGGGAGGAACTGGGTGCGTGATGTGGCACGGGGATTTGATGGATACGAGGACGTACGGTGCTGCTGTGGGTCAACAAGATTTATACGTACGTGTTGATGCAGCTGAATTAATTGTTCAAAATTCCAAGCCTTCATCAGGTAAATCTGCGAAGAAGAGGGAGGTGGTAATTCTTGTGACAACCACAGTAACATCAATGCTCCTGGTGGCATTTTCAGTATATTGCTTAGTGATTAAGAACAAAAAAGTAAGGGGAAGAAATAGCGCATGTGGATTAAGGATGACCACGACTAATCCGTCGACATTCTTAATGGGCGACTCTTCGGGTGTGAATGACCTGGAAAAAGATAGAAAGAAGTCAGATCTTCCGTTGTTTGATCTAAACACGATACTCATAGCAACAGACAATTTCTCCTTTGCTAACAAGCTTGGTCAAGGTGGTTTTGGCACAGTTTATAAGGGAGTGCTCTATGATGGAAAAGAAATAGCAGTGAAAAGACTAAGTAAGCATTCAGGGCAGGGAATACAAGAGCTCAAGAATGAAATAACATTGATAGCACAACTCCAACACAGAAACCTGGTCAAGATTTTAGGCTTTTGCATCCAAGATGAAGAGAAGTTGCTCATTTATGAATACTTGCCTAACAAAAGCTTGGACTCTTTTATCTTTGATGAAATAAAAAAAGAATTTTTAGATTGGAGAAAACGTTCTGAGATCATTATCGGTGTATCTCGTGGAATGTTATACCTTCATCAAGATTCAAGATTAAGAATAATTCATAGAGATCTGAAGACGAGCAATGTTCTATTAGACGCCGATTTAAACCCCAAAATAGCAGATTTTGGCATGGCAAGAATTTTCGGAGGGGATCAAATGGAAGCCAATACCACTCGAGTTGTTGGAACATACGGTTATATGTCTCCAGAATATGCTATGGAAGGGTTATTTTCGATAAAGTCAGACGTATACAGCTTCGGAGTTTTGCTCTTAGAGATCATTACTGGTAGAAAGAACAGCAATTACTACCATGACGAATCATCTTTGAATTTAGTCGGACATGTTTGGAAGTTATGGAAAGAAGGGAGAGGAATGGAAATAGTTGACACAACCTTGGATGAATCCGATTATGGTGAGATTGTAAGATATGTACACATTGGGCTGTTGTGCGTGCAGGAGCAGGCAGCTGATCGACCCAAAATGTCGGCAGTTGTGTTCATGTTAAGCAATGACGTGCCACTTCCGACACCAAAACAGCCTGCATTCATTATAAAGAGAAACTATAATTGCAATCACGGAACAGATCCATCTACCAGTGAAGGAGCTAATTCTGCAAATGACCTAACTTTTACTGTTCTTGAAGCTCGTTGA 2565 43.74 MNSTKLYFYSRTVLLLLHHLVIFHICVALGINNTLSSNDIVRDGDKLVSRNKTFALGFFSPGDSPRRYVGIWYNKVPDQTVVWVANRDNPLNDTSGALSINTRGNLIIYTKTPDVPLWSTNISSLFSTKPTMAKLLDSGNLVITQPESQEIIWQSFDYPTNTLLPYMKLGLDRQTGFTWFLTSWKAVNDPGTGNFSHKIDPTGFSQSFIYKDRSPWWRGGPWTGHRWSGVPEMAPNFIINVSYVDNISEVSTSYGVTDNSITRKVLDESGFIRRSRWDDQDGKWFEFWSAPVHWCDKYGQCGPNSNCDPDRTELFVCTCLPGFEPKSPRDWYLRDGSSGCVRKQNVSTCRSGEGFVTVSRVKVPDTSVARVNMSMSLEACKEECLKNCSCVGYTSADDSGGGTGCVMWHGDLMDTRTYGAAVGQQDLYVRVDAAELIVQNSKPSSGKSAKKREVVILVTTTVTSMLLVAFSVYCLVIKNKKVRGRNSACGLRMTTTNPSTFLMGDSSGVNDLEKDRKKSDLPLFDLNTILIATDNFSFANKLGQGGFGTVYKGVLYDGKEIAVKRLSKHSGQGIQELKNEITLIAQLQHRNLVKILGFCIQDEEKLLIYEYLPNKSLDSFIFDEIKKEFLDWRKRSEIIIGVSRGMLYLHQDSRLRIIHRDLKTSNVLLDADLNPKIADFGMARIFGGDQMEANTTRVVGTYGYMSPEYAMEGLFSIKSDVYSFGVLLLEIITGRKNSNYYHDESSLNLVGHVWKLWKEGRGMEIVDTTLDESDYGEIVRYVHIGLLCVQEQAADRPKMSAVVFMLSNDVPLPTPKQPAFIIKRNYNCNHGTDPSTSEGANSANDLTFTVLEAR 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9942343 9946131 + Conep15aG0128900.1 Cone15ag1260 454388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1260 854 Gene3D Transferase(Phosphotransferase) domain 1 612 811 - -
Cone15ag1260 854 SUPERFAMILY Protein kinase-like (PK-like) 519 806 IPR011009 -
Cone15ag1260 854 ProSitePatterns Serine/Threonine protein kinases active-site signature. 657 669 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag1260 854 SMART blect_4 38 159 IPR001480 -
Cone15ag1260 854 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 503 611 - -
Cone15ag1260 854 Pfam Protein tyrosine and serine/threonine kinase 538 803 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag1260 854 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 190 IPR036426 -
Cone15ag1260 854 SMART ntp_6 350 431 IPR003609 -
Cone15ag1260 854 CDD B_lectin 38 159 IPR001480 -
Cone15ag1260 854 ProSitePatterns Protein kinases ATP-binding region signature. 542 564 IPR017441 GO:0005524(InterPro)
Cone15ag1260 854 Gene3D Phosphorylase Kinase; domain 1 505 611 - -
Cone15ag1260 854 Pfam S-locus glycoprotein domain 217 327 IPR000858 GO:0048544(InterPro)
Cone15ag1260 854 CDD STKc_IRAK 542 806 - -
Cone15ag1260 854 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 612 813 - -
Cone15ag1260 854 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 27 156 - -
Cone15ag1260 854 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 32 818 - -
Cone15ag1260 854 SMART serkin_6 536 805 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag1260 854 Pfam PAN-like domain 349 415 IPR003609 -
Cone15ag1260 854 ProSiteProfiles PAN/Apple domain profile. 349 432 IPR003609 -
Cone15ag1260 854 Gene3D - 27 156 IPR036426 -
Cone15ag1260 854 Pfam D-mannose binding lectin 80 185 IPR001480 -
Cone15ag1260 854 ProSiteProfiles Protein kinase domain profile. 536 820 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag1260 854 PIRSF SRK 3 854 IPR024171 GO:0004674(InterPro)
Cone15ag1260 854 ProSiteProfiles Bulb-type lectin domain profile. 32 156 IPR001480 -
Cone15ag1260 854 CDD PAN_AP_plant 347 431 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1248 Cone-Chr15:9841560 Cone15ag1260 Cone-Chr15:9942343 0 dispersed
Cone15ag1250 Cone-Chr15:9870262 Cone15ag1260 Cone-Chr15:9942343 0 dispersed
Cone15ag1260 Cone-Chr15:9942343 Cone9ag1060 Cone-Chr9:5810152 0 dispersed
Cone15ag1255 Cone-Chr15:9905960 Cone15ag1260 Cone-Chr15:9942343 0 proximal
Cone15ag1256 Cone-Chr15:9907803 Cone15ag1260 Cone-Chr15:9942343 1.28E-143 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82180 PF01127 Sdh_cyt 9.50E-13 CL0335 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1260 - - - 0.0